Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme48138g00001 GTTCGTGGCTTGCCTTGTGCGCATAATTTTCATGTTGAATGCATTGACGAGTGGCTTAGACTGAATGTGAAATGTCCTCGGTGCCGTTGCTCGGTGTTTCCTAATCTCGATCTTAGTGCCCTATCCAATCTCCGTCCTGATTCTGAACGATCTTCTGCCAGTGTTGTGACAACAACNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNCTTCGCCCAGTGCGTGCTGAAATTGCAGGGCCAGTTGGTGACACAGATAATGCTTTGCAAAATGCCGAGAACGGTGTTGTACCTATTGTGACACAAAATGCACCAAACAGAATCCAGGTCTCTTCTGTGGAATGCATGCCTGTCAGTCATTCCTCTCCACAAAGTTAG 402 0.4055 VRGLPCAHNFHVECIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRPDSERSSASVVTTTXXXXXXXXXXXXXXXXXXXLRPVRAEIAGPVGDTDNALQNAENGVVPIVTQNAPNRIQVSSVECMPVSHSSPQS 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme48138g00001 133 SUPERFAMILY RING/U-box 2 37 - -
Trme48138g00001 133 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 53 IPR013083 -
Trme48138g00001 133 Pfam RING-H2 zinc finger domain 5 29 IPR024766 GO:0008270
Trme48138g00001 133 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 112 IPR044793 GO:0004842|GO:0010182
Trme48138g00001 133 ProSiteProfiles Zinc finger RING-type profile. 4 29 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme48138g00001 1 115 C3H Transcription Factor Family AT3G47990 50.420 5.25e-30 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme48138g00001 K16284 - gmx:100812016 180.259