Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme48121g00001 GAAATCCCACCGGCCCCAACATACAAGACCCCACCGGCACTAGTAGCATTCACCCTCACCGTCCTCATCCTATGCTTTGTGGCTTTTAGCGTCGTTTATCTTTGCAAGTATTGTTTTGCAAGCGTTTTACATACTTGGGCCTTACAACGCACGGCCTCAGGATCCCTCGTTCGTCTCTCACCTGAGAGGTCACCTCCTAGGGGACTCGATCTTACCCTTCTAGAAAAATTTCCAACTTTCCTCTACGCCTCCGTAAAAGACCTTCGCAAGGAGAAGAGTTATAGCTTAGAATGTGCCATTTGTTTGCTAGAGTTCGAAGACGATAGCATGCTTCGTCTCCTAACCATTTGTTGCCATGTTTTCCACCAAGAATGTATTGACCTATGGCTTCAATCTCACAAGACATGCCCCGTTTGTCGAACCNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNCACCAACAACAATAATGAACAAGAGGGTATGTCATCATTACCGTGCGATGATGACATACACATTGATATTAGAGAAGAGGAAAGAGACAGTGTTGGTGAGATCACTAGAGCTCAAATACATGAAGGTAATCAAAATGTGAGTACAAGCATGAGACAACAAGAAGAACAAAGATTTTCAAGGTGTCATTCAACAGGACATTCTATAGTAATGATTAGWGGTGAAGAAAAAGATGATGAGAAATATACATTGATATTGCCTGAACATGTTATAAGAGGAGGACACAACTGCACAAAGAGTTGTACAAATTACAGTGAGATGACATTGACAGTGCCTACACCTTGTAGTAATTGTGGTTTTATTAAACCAGTATCTGCCTCCTCTTCACTTGCTCAAGCTCAAGAGGCTTGA 891 0.3973 EIPPAPTYKTPPALVAFTLTVLILCFVAFSVVYLCKYCFASVLHTWALQRTASGSLVRLSPERSPPRGLDLTLLEKFPTFLYASVKDLRKEKSYSLECAICLLEFEDDSMLRLLTICCHVFHQECIDLWLQSHKTCPVCRTXXXXXXXXXXXXXXXXXXXXTNNNNEQEGMSSLPCDDDIHIDIREEERDSVGEITRAQIHEGNQNVSTSMRQQEEQRFSRCHSTGHSIVMIXGEEKDDEKYTLILPEHVIRGGHNCTKSCTNYSEMTLTVPTPCSNCGFIKPVSASSSLAQAQEA 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme48121g00001 296 SMART ring_2 98 139 IPR001841 -
Trme48121g00001 296 SUPERFAMILY RING/U-box 75 144 - -
Trme48121g00001 296 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 144 IPR013083 -
Trme48121g00001 296 ProSiteProfiles Zinc finger RING-type profile. 98 140 IPR001841 -
Trme48121g00001 296 Pfam Ring finger domain 97 140 IPR001841 -
Trme48121g00001 296 Coils Coil 162 169 - -
Trme48121g00001 296 PANTHER RING FINGER DOMAIN-CONTAINING 12 141 - -
Trme48121g00001 296 FunFam E3 ubiquitin-protein ligase ATL6 58 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme48121g00001 Trme-Chr48121 83 973 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme48121g00001 12 252 Rapid Response to Elicitors AT2G35000 32.941 5.60e-32 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme48121g00001 - - gmx:100815505 322.783