Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme48115g00001 ATGGAGAGGCAAGAACGTGAAAGGCAGAAGGAAGAGGAAAGATTATTGCGTGAAAGACAGCGAGAGGAGGATAGGCTCCTTAGAGAACAGAGACGTGAGCAGGAGCGGCGGGAGAAGTTTTTGCAGAAGGAATCACTCAGAACTGAGAAAATGAGACAGAAGGAAGAACTACATAGGGTGAAAGAGGAGGCAAGGATTAAAGCTGCTAGTGAGAGAGCTATTGCCCGCAGAATGGTCAAAGACGCAATGGACCTTATTGAAGATGAACGTCTGGAACTCATGGAATTAGCTGCATCAAAGAAGGGGCTATCTTCAATACTGGCTCTTGACTACGAAACTATGCAAAATCTTGAATCATATGGAGGTGAATAA 372 0.4489 MERQERERQKEEERLLRERQREEDRLLREQRREQERREKFLQKESLRTEKMRQKEELHRVKEEARIKAASERAIARRMVKDAMDLIEDERLELMELAASKKGLSSILALDYETMQNLESYGGE 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme48115g00001 123 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 1 120 IPR044977 GO:0006357
Trme48115g00001 123 Coils Coil 1 37 - -
Trme48115g00001 123 Coils Coil 43 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme48115g00001 Trme-Chr48115 436 891 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme48115g00001 1 120 Homeobox Transcription Factor Family AT5G44180 70.833 5.16e-39 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme48115g00001 - - lja:Lj0g3v0211739.1 142.124