Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme480237g00001 ATGAGTTTGCAGGACGGAGAAGGGAGAGGTGTGCCACGGCGGTGTAGTCATTGTGGTGTTACGAAAACTCCTCAGTGGCGAACCGGACCGGTTGGACCGAAAACGCTTTGTAATGCTTGTGGAGTTCGTTATAAGTCGGGTCGGTTGTTACCCGAATATAGACCCGCTTGTAGCCCGACTTTTTCAA 187 0.5134 MSLQDGEGRGVPRRCSHCGVTKTPQWRTGPVGPKTLCNACGVRYKSGRLLPEYRPACSPTFS 62
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme480237g00001 62 PANTHER GATA TRANSCRIPTION FACTOR 10 62 - -
Trme480237g00001 62 SMART GATA_3 9 59 IPR000679 GO:0006355|GO:0043565
Trme480237g00001 62 FunFam GATA transcription factor 9 59 - -
Trme480237g00001 62 ProSiteProfiles GATA-type zinc finger domain profile. 9 45 IPR000679 GO:0006355|GO:0043565
Trme480237g00001 62 CDD ZnF_GATA 14 62 IPR000679 GO:0006355|GO:0043565
Trme480237g00001 62 Pfam GATA zinc finger 15 49 IPR000679 GO:0006355|GO:0043565
Trme480237g00001 62 ProSitePatterns GATA-type zinc finger domain. 15 40 IPR000679 GO:0006355|GO:0043565
Trme480237g00001 62 Gene3D - 11 59 IPR013088 GO:0006355|GO:0008270
Trme480237g00001 62 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 9 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme480237g00001 Trme-Chr480237 12 198 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme480237g00001 1 61 C2C2-Gata Transcription Factor Family AT4G32890 75.410 1.37e-29 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Trme480237g00001 GATA 8.5e-19 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme480237g00001 - - vvo:131608554 122.864