Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme480197g00001 CTTGTTTCTGTTTTACCTCAAAAGGATCACGACGAGTTCATTGATGAATCATTGAACGGGGACTTTCCATCTTGGGTGACAAGTAAGGATAGAAGGCTTTTGGAGTCTTCAGTTGGGGACGTAAAGGCCAATGTTGTGGTGGCTAAAGATGGGAGCGGCAAGTTCAAGACGGTAGTTGAGGCTGTGGCATCTGCACCAGACAACGGTAAGACAAGGTATGTTATCTATGTGAAAAGGGGAATCTACAAAGAGAAAGTAGATATCGGTAGTAAAAAGACGAATGTG 285 0.4386 LVSVLPQKDHDEFIDESLNGDFPSWVTSKDRRLLESSVGDVKANVVVAKDGSGKFKTVVEAVASAPDNGKTRYVIYVKRGIYKEKVDIGSKKTNV 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme480197g00001 95 PANTHER PECTINESTERASE 24 95 - -
Trme480197g00001 95 SUPERFAMILY Pectin lyase-like 42 95 IPR011050 -
Trme480197g00001 95 Pfam Pectinesterase 44 95 IPR000070 GO:0030599|GO:0042545
Trme480197g00001 95 ProSitePatterns Pectinesterase signature 1. 69 88 IPR018040 -
Trme480197g00001 95 Gene3D - 5 95 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme480197g00001 Trme-Chr480197 2 286 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme480197g00001 1 95 Carbohydrate Esterase AT1G11580 61.856 3.35e-32 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme480197g00001 K01051 - gmx:100815836 152.14