Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme48017g00001 ATGGTCTCACAACAATCACTTATTGTTCTTGCAAGGCCAGTGGTGAATGAATTGAAAATGGAGGACTTGTTAAGAGCACCTGCTGAAATGATTGGGAGAGGAAAGAATGGAAGTCTTTATAAGGTTATGTTAACCAATGGAATAGTAGTGGTTGTGAAAAGGATTAAGGATTGGAGTATTTCTAGTGTTGAATTCAAGCAAAGAATGCAACTATTGAATCAAGCAAAGCATCCTCATGTTCTGTCACCTCTTGCTTTCTATGTTTCCAAACAAGAGAAGCTTTTGGTCTATGAATATCAACAAAATGGAAGTTTGTTCAAGCTTCTACATGGTAAATTTTAA 342 0.3596 MVSQQSLIVLARPVVNELKMEDLLRAPAEMIGRGKNGSLYKVMLTNGIVVVVKRIKDWSISSVEFKQRMQLLNQAKHPHVLSPLAFYVSKQEKLLVYEYQQNGSLFKLLHGKF 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme48017g00001 113 SUPERFAMILY Protein kinase-like (PK-like) 29 112 IPR011009 -
Trme48017g00001 113 Pfam Protein kinase domain 29 110 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme48017g00001 113 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 13 111 IPR046959 -
Trme48017g00001 113 Gene3D Phosphorylase Kinase; domain 1 3 99 - -
Trme48017g00001 113 ProSitePatterns Protein kinases ATP-binding region signature. 31 53 IPR017441 GO:0005524
Trme48017g00001 113 ProSiteProfiles Protein kinase domain profile. 25 113 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme48017g00001 Trme-Chr48017 34 375 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme48017g00001 18 111 Receptor kinase-like Gene Family AT1G68400 48.958 5.47e-25 96.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trme48017g00001 Pkinase 8.3e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme48017g00001 - - vvo:131595445 196.052