Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme48016g00001 ATGTTTAATGAATGGCTAAATGAATGCTTGATAGAGAGTCCAGGATCTACATCACAGACAGAAACATCAGATCGTAGCACTTCTCAAAGAGGAGCTGAATATCAAGAAAGCTTGAACCTGAATGATCAGATGTTTAAGCCGGGTTGGAAAGACATATTCCGGATGAATGAGAATGAAATTGTATCTGAAATNCGGAAGGTTTATCGTGACTCAACCCTTGATCCAAGGAGAAAGGCATATCTGGTGCAGAATCTAATGACAAGTCGCTGGATAGCTGCCCAACAGAAGTTACCTAAATCTCAATCTGGAGAATCATCGAATAAACAAATAGAAGGATACTTACCTTCATTTCGGGACCCAGAGAAACAAGTATTTGGCTGTGAACACTATAAGAGAAATTGCAAAATTCGAGCTGCTTGTTGTGGCAAGTTATTTACATGCAGATTTTGTCATGACAACAATTCAAGTGATCACTCRATGGATAGAAAAGCAACATTAGAAATGATGTGTATGGCCTGCATGACTATACAGCCAGTTGGGCCCATATGCACGACGCCTTCATGTAATGGACTTTCAATGGCAAAGTACTACTGTAACATTTGCAAATTTTTTGACGATGAAAG 623 0.3917 MFNEWLNECLIESPGSTSQTETSDRSTSQRGAEYQESLNLNDQMFKPGWKDIFRMNENEIVSEXRKVYRDSTLDPRRKAYLVQNLMTSRWIAAQQKLPKSQSGESSNKQIEGYLPSFRDPEKQVFGCEHYKRNCKIRAACCGKLFTCRFCHDNNSSDHSMDRKATLEMMCMACMTIQPVGPICTTPSCNGLSMAKYYCNICKFFDDE 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme48016g00001 207 MobiDBLite consensus disorder prediction 13 33 - -
Trme48016g00001 207 ProSiteProfiles Zinc finger CHY-type profile. 120 190 IPR008913 GO:0008270
Trme48016g00001 207 ProSiteProfiles Zinc finger CTCHY-type profile. 193 207 IPR017921 -
Trme48016g00001 207 SUPERFAMILY CHY zinc finger-like 119 184 IPR037274 GO:0008270
Trme48016g00001 207 Pfam CHY zinc finger 127 203 IPR008913 GO:0008270
Trme48016g00001 207 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 55 207 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme48016g00001 1 207 C2H2 Transcription Factor Family AT3G18290 67.308 2.81e-92 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme48016g00001 K16276 - gmx:100791354 385.956