Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme479913g00001 GCTGGTTTGACTGAACCATGTGTGAAACCATCTGCATCTGTTTCTCAACTTACCATTTTCTATGCCGGTACTGTGAACATCTTTAATGATACCGCTTCTGAGAAGGCACAAGCCATCATGTTGTTGGCTGGAAATGGAATATCTGCAGCTTCAAACATGGTTCAACATGAAGTTCAGGAACCTAGTTCAAAGTTCGCATCAGGTGATGATGGTATTTCTAGTCCTTTATCTGTTTCTTCACACACCGGTCCACAGTCAGGGAGTGGCTCAAATAGAAGTGATGA 284 0.4296 AGLTEPCVKPSASVSQLTIFYAGTVNIFNDTASEKAQAIMLLAGNGISAASNMVQHEVQEPSSKFASGDDGISSPLSVSSHTGPQSGSGSNRSD 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme479913g00001 94 SMART tify_2 10 45 IPR010399 -
Trme479913g00001 94 Pfam tify domain 13 44 IPR010399 -
Trme479913g00001 94 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 11 78 IPR040390 -
Trme479913g00001 94 ProSiteProfiles Tify domain profile. 10 45 IPR010399 -
Trme479913g00001 94 MobiDBLite consensus disorder prediction 58 94 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme479913g00001 6 47 Tify Gene Family AT1G70700 61.905 1.45e-11 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Trme479913g00001 tify 1.7e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme479913g00001 K13464 - gmx:100787821 117.472