Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trme47990g00001 | ATGACAGCATGCAACAAAGGCCATCATGGTCCTGTTCACTGTGTCCGTTTTTCTCCTGGTGGAGAATCATATGCATCAGGATCTGAGGATGGAACCATCAGAATATGGCAGACAGGTCCATTGACTCATGATGAATCAGAGGGTTTATCACCAAATGGATCCCTGGAAAAGGAGAAAGCAAATGCCGAGGAGGATATTTCACGCAGGATTGAGGGTTTTCATATTGCAGAGGAGGCAAAATCTAAAGGAAAGGAAGAGGCTGGGGAGGAATNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNCCATTGTTTTGCAATTTTAGCATGTTATGTGAACCATGGGCCTTCTGATATACATCATAATTAG | 366 | 0.3989 | MTACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTGPLTHDESEGLSPNGSLEKEKANAEEDISRRIEGFHIAEEAKSKGKEEAGEEXXXXXXXXXXXHCFAILACYVNHGPSDIHHN | 121 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trme47990g00001 | 121 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 5 | 37 | IPR001680 | GO:0005515 | |
| Trme47990g00001 | 121 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I | 3 | 81 | - | - | |
| Trme47990g00001 | 121 | MobiDBLite | consensus disorder prediction | 37 | 63 | - | - | |
| Trme47990g00001 | 121 | Pfam | WD domain, G-beta repeat | 6 | 36 | IPR001680 | GO:0005515 | |
| Trme47990g00001 | 121 | Gene3D | - | 1 | 65 | IPR015943 | GO:0005515 | |
| Trme47990g00001 | 121 | SUPERFAMILY | WD40 repeat-like | 6 | 37 | IPR036322 | GO:0005515 | |
| Trme47990g00001 | 121 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 5 | 37 | - | - | |
| Trme47990g00001 | 121 | SMART | WD40_4 | 1 | 37 | IPR001680 | GO:0005515 |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trme47990g00001 | 6 | 35 | Eukaryotic Initiation Factors Gene Family | AT2G46290 | 53.333 | 3.26e-06 | 42.7 |