Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme47983g00001 AGTGTAAGAAGAAGACACTATAGAGGTGTGCGGCAGAGGCCATGGGGAAAATGGGCGGCAGAGATTCGCGATCCGAAGAAAGCAGCAAGAGTATGGCTAGGAACCTTTGAAACTGCTGAGGCTGCAGCAATTGCCTATGATGAAGCTGCACTCAGATTCAAAGGAAGCAAAGCTAAGCTCAATTTCCCTGAAAGAGTTCAAAGTTCAGCAGAATTTGGATATAACCAACAATTTCATCACATAGCTTCAAACACAAGTAACATGCAACAATCTAACCAACAAGTTCCTCTTCCACAGTTTTCTCAAGAAACATATTCAAATCCTTATCAATATGCTGCACAAGCACAACTTCAGGCTAGCGGTAGTAGTAACTTCAATCAGGATATGCTTCGTTTCTATGGGAGAGATATGTTTGTTTCTAATTCTCAGCCTTTAATATCAAATGCATCTTCGTCTTCATCCTCGTCTTCTGGATTATCTCAGCAACAACAAGAGTTTTTGAGATTGTCGATGCAATTCGGTGGTTCTTCTTCCTCTTCTTCCGCTTATGAGCCTCCGAGTAATTGGGGGGATGGAATGGATGGGAAACAATGA 594 0.4209 SVRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEAAAIAYDEAALRFKGSKAKLNFPERVQSSAEFGYNQQFHHIASNTSNMQQSNQQVPLPQFSQETYSNPYQYAAQAQLQASGSSNFNQDMLRFYGRDMFVSNSQPLISNASSSSSSSSGLSQQQQEFLRLSMQFGGSSSSSSAYEPPSNWGDGMDGKQ 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme47983g00001 197 CDD AP2 6 64 IPR001471 GO:0003700|GO:0006355
Trme47983g00001 197 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Trme47983g00001 197 MobiDBLite consensus disorder prediction 170 186 - -
Trme47983g00001 197 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Trme47983g00001 197 PANTHER DNA-BINDING DOMAIN 4 150 IPR044808 GO:0003700|GO:0009873
Trme47983g00001 197 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Trme47983g00001 197 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Trme47983g00001 197 MobiDBLite consensus disorder prediction 170 197 - -
Trme47983g00001 197 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Trme47983g00001 197 Pfam AP2 domain 6 55 IPR001471 GO:0003700|GO:0006355
Trme47983g00001 197 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Trme47983g00001 197 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme47983g00001 Trme-Chr47983 319 912 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme47983g00001 2 67 AP2-EREBP Transcription Factor Family AT5G61890 93.939 6.54e-42 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Trme47983g00001 AP2 9.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme47983g00001 - - gmx:100787091 173.326