Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme47970g00001 ATGGCACCACCAAGTTTTGATTTTGCAAGTCTGTTTTGTCAAGAAGATAGCAGCATTTTTGATGAAAATGATTTTGGAGGTCCAAATTCATTTGAGATGTTGGATGAATCATGGCAAGATGAATGTGATCCATACCTCAATCAAATTCCACAATTTGATGACTCAACTCAGCAATTCAATGAACCAATTGCGTTGGTTCCACCACCATTGCTGAGTGATGAGAGTTTGAAGGACTTGGTTGCAAAAGAATGCCATCATTTGCCTGCTAGTGATTATGTCAATAGGCTGAAATATGGGGATTTGGATTTGCAGGACAGAATGGAGGCCGTTGATTGGATTGAAAAGGTTGGAGTGCATTTTGGTTTTGGACCTCTCTGTTTGTACCTAGCTGTAAGCTTCATGGATCGCTTCCTTTCTGTGGTTGAAATGCTGAAGGAAAGAACTTGGTCAATTCAACTCTTGGCTGTGGGTTGCTTGTATCTGGCAGCTAAAATCGATGAAACTGTAGTTCCTCGAACTGTTGATATGCAG 531 0.4087 MAPPSFDFASLFCQEDSSIFDENDFGGPNSFEMLDESWQDECDPYLNQIPQFDDSTQQFNEPIALVPPPLLSDESLKDLVAKECHHLPASDYVNRLKYGDLDLQDRMEAVDWIEKVGVHFGFGPLCLYLAVSFMDRFLSVVEMLKERTWSIQLLAVGCLYLAAKIDETVVPRTVDMQ 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme47970g00001 177 PANTHER CYCLINS 42 171 IPR039361 -
Trme47970g00001 177 ProSitePatterns Cyclins signature. 106 137 IPR006671 -
Trme47970g00001 177 SUPERFAMILY Cyclin-like 69 175 IPR036915 -
Trme47970g00001 177 Gene3D - 91 177 - -
Trme47970g00001 177 Pfam Cyclin, N-terminal domain 77 176 IPR006671 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme47970g00001 Trme-Chr47970 247 953 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme47970g00001 47 177 Core Cell Cycle Gene Families AT5G10440 43.609 8.03e-32 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme47970g00001 K18810 - tpra:123922384 352.058