Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme4795g00001 ATGGCTCTCATTCCAATTGACTCAAATTGGTATGATGCTCATGCAACCTTTTATGGTGACATGCATGGCGATGAAACCATGCAGGGGGCTTATAGTTATGGTGATCTCTTCCAACAAGGATATGGACTTGAAACCACGGCACTAAGCACAGCTCTATTCCATGGAGGCTATACTTGTGGTGCATGTTTTGAGATCAAGTGCGTCAACGATCCCCAATGGTGCAAAAAAGATGTGCGCTCAATCACCGTAACAACAACAAATTTTTGTCCTCCCAATTACAGCAAACCTGATGGCAATTGGTGTAATCCTCCACAAAAACACTTTGACTTGAGCATGAAGATGTTTACAACTATTGCCATTTACGAAGCAGGGATCATCCCGGTTCAATATCGCCGTGTTCCATGTGTCAAAAGTGGTGGTGTTAGATTTGAGCTTAGGAGAAACCTTTACTTTTTGATGGTATTGGTGTACAATGTTGCTAACGCCGGTTATGTTTTTCGTGTGAGTATCAAAGAGTCTAATACTAATTGGGCTCCCATGACACATAATTGGGGACAATTTTGGGACATTGGAATTAATTTGGTTGGTGAAGGCTTGTCATTTTGGGTTACTACAAGTGATGGAAAAGCTTTAAAATTTGATTCTATTGTTCCTTTCAATTGGCAATTCGGACAAACCTATGAAGGCTCTATTAATTTTTAG 702 0.4046 MALIPIDSNWYDAHATFYGDMHGDETMQGAYSYGDLFQQGYGLETTALSTALFHGGYTCGACFEIKCVNDPQWCKKDVRSITVTTTNFCPPNYSKPDGNWCNPPQKHFDLSMKMFTTIAIYEAGIIPVQYRRVPCVKSGGVRFELRRNLYFLMVLVYNVANAGYVFRVSIKESNTNWAPMTHNWGQFWDIGINLVGEGLSFWVTTSDGKALKFDSIVPFNWQFGQTYEGSINF 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme4795g00001 233 PRINTS Expansin signature 98 115 IPR002963 GO:0009664
Trme4795g00001 233 PRINTS Expansin signature 139 151 IPR002963 GO:0009664
Trme4795g00001 233 PRINTS Expansin signature 215 231 IPR002963 GO:0009664
Trme4795g00001 233 PRINTS Expansin signature 115 128 IPR002963 GO:0009664
Trme4795g00001 233 PRINTS Expansin signature 40 54 IPR002963 GO:0009664
Trme4795g00001 233 PRINTS Expansin signature 151 172 IPR002963 GO:0009664
Trme4795g00001 233 PRINTS Expansin signature 67 78 IPR002963 GO:0009664
Trme4795g00001 233 PRINTS Expansin signature 81 91 IPR002963 GO:0009664
Trme4795g00001 233 PRINTS Expansin signature 186 207 IPR002963 GO:0009664
Trme4795g00001 233 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 150 229 IPR007117 -
Trme4795g00001 233 SUPERFAMILY Barwin-like endoglucanases 7 158 IPR036908 -
Trme4795g00001 233 CDD DPBB_EXPA_N 10 135 - -
Trme4795g00001 233 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 28 140 IPR007112 -
Trme4795g00001 233 SUPERFAMILY PHL pollen allergen 137 229 IPR036749 -
Trme4795g00001 233 SMART dpbb_1 45 130 IPR007112 -
Trme4795g00001 233 Pfam Expansin C-terminal domain 141 218 IPR007117 -
Trme4795g00001 233 PANTHER EXPANSIN-A15 8 230 IPR002963 GO:0009664
Trme4795g00001 233 Gene3D - 140 233 IPR036749 -
Trme4795g00001 233 Gene3D - 4 135 IPR036908 -
Trme4795g00001 233 PRINTS Expansin/Lol pI family signature 215 229 IPR007118 GO:0005576
Trme4795g00001 233 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576
Trme4795g00001 233 PRINTS Expansin/Lol pI family signature 177 191 IPR007118 GO:0005576
Trme4795g00001 233 PRINTS Expansin/Lol pI family signature 9 24 IPR007118 GO:0005576
Trme4795g00001 233 PRINTS Expansin/Lol pI family signature 27 45 IPR007118 GO:0005576
Trme4795g00001 233 PRINTS Expansin/Lol pI family signature 123 139 IPR007118 GO:0005576
Trme4795g00001 233 Pfam Lytic transglycolase 45 130 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme4795g00001 Trme-Chr4795 702 1847 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme4795g00001 6 233 Expansin Gene Family AT5G39280 61.842 3.21e-108 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme4795g00001 - - qsa:O6P43_002576 342.813