Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme47947g00001 ACCTATGTCGGTGTTTACGACGGTCATGGTGGTCCTGAAGCTTCTAGATTCGTCAATAACCATCTCTTCCCTTATTTGCACAAATTTGCCTCTGAGCAAGGAGGATTGTCRGTAGATGTAATTAAAAAAGCCTTTAGTGCGACCGAGGAGGATTTTTTGCATTTGGTTAAGTTGTCGTTACCAGTTAGTCCCCAGATTGCGTCTGTTGGATCTTGTTGTCTTCTCGGTGCAATTTCTAATAATGTGTTGTATGTGGCTAACCTCGGAGACTCCAGAGTTGTTCTTGGCAGGAGGTATTCTGAGAACAAGAATTATCCGGTGGAGGCTATCCGCTTGTCAACAGATCATAATGTAGCAGACGAGGAGGTGAGGAGAGAAGTCGAGGCTCTCCACCCTGATGATTCACACATTGTGGTTTATACTCGTGGAGTTTGGAGGATTAAGGGCATCATACAGGTATACATATAA 468 0.4402 TYVGVYDGHGGPEASRFVNNHLFPYLHKFASEQGGLSVDVIKKAFSATEEDFLHLVKLSLPVSPQIASVGSCCLLGAISNNVLYVANLGDSRVVLGRRYSENKNYPVEAIRLSTDHNVADEEVRREVEALHPDDSHIVVYTRGVWRIKGIIQVYI 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme47947g00001 155 ProSiteProfiles PPM-type phosphatase domain profile. 1 155 IPR001932 -
Trme47947g00001 155 Pfam Protein phosphatase 2C 2 152 IPR001932 -
Trme47947g00001 155 PANTHER PROTEIN PHOSPHATASE 1 153 IPR015655 GO:0004722|GO:0006470
Trme47947g00001 155 CDD PP2Cc 1 153 IPR001932 -
Trme47947g00001 155 ProSitePatterns PPM-type phosphatase domain signature. 2 10 IPR000222 GO:0043169
Trme47947g00001 155 SUPERFAMILY PP2C-like 2 150 IPR036457 -
Trme47947g00001 155 Gene3D - 1 154 IPR036457 -
Trme47947g00001 155 SMART PP2C_4 1 155 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme47947g00001 Trme-Chr47947 3 713 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme47947g00001 1 153 PP2C-type Phosphatase Gene Family AT3G51370 58.824 6.85e-63 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme47947g00001 - K01102 gmx:100813810 273.092