Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme47945g00001 ATGGATGAAATCAAAGTTCTTAGCCAGCTGAAACATCCAAACATTGTGCAGTATTATGGTAGTGAAATAATAGAAGACAAGTTTTATATTTATTTGGAGTTTATCCATCCTGGCTCAATAAATAAATATGTCCGTGACCACTGTGGTGCGGTAACAGAATCCGTTGTTCGGAATTTCACACGACATATTCTTTCGGGGTTGGCTTACTTGCACAGCAAAAAGACAATTCATAGGGATATCAAAGGGGCTAACTTGCTTGTTGATTCTTCTGGTGTTGTTAAGCTTGCTGATTTTGGGATGGCCAAGCAT 309 0.3883 MDEIKVLSQLKHPNIVQYYGSEIIEDKFYIYLEFIHPGSINKYVRDHCGAVTESVVRNFTRHILSGLAYLHSKKTIHRDIKGANLLVDSSGVVKLADFGMAKH 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme47945g00001 103 ProSiteProfiles Protein kinase domain profile. 1 103 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme47945g00001 103 Gene3D Transferase(Phosphotransferase) domain 1 1 103 - -
Trme47945g00001 103 SMART serkin_6 1 103 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme47945g00001 103 SUPERFAMILY Protein kinase-like (PK-like) 2 103 IPR011009 -
Trme47945g00001 103 Pfam Protein kinase domain 2 102 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme47945g00001 103 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 2 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme47945g00001 Trme-Chr47945 93 798 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme47945g00001 3 103 MAP Kinase Kinase Kinase AT5G66850 84.158 1.17e-61 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Trme47945g00001 Pkinase 8e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme47945g00001 - - psat:127115289 207.223