Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme47931g00001 ATGGAATGCGGTGGTGATGATTATTTCATGGAAAAGTACAACGCTGTTAACATTGACGGTGACGATTTTCTTAGAGAGATTCTGTTACAGACACCAGAACAGAGTTTAATGGAGTATTCAGGAAGTGAAAACGGTTCTGTTACCGTTAACGTTAACGGCGATGTTGAGGTTGTTGGAAACATGGTTAAAAGTAACAGTTCAAATTCAATCGTGTCTCAAAAACAANNNNNNNNNNANNNNNAACAACAACGTTTGAAATCGAAAAAGGTTGTTGTTCCTCGTAGATGTTCATCGCCAAAGACATACATTTTGTCTTTTGATAATTCAACTATGATACCAGCTACACCTGAACCTTGTGTTAATTTGGAAGCTGGTGGTAAACGCGATTATTGTTCTAAATCTGATTATTCTAAGAAGAATAAATTAGAGAGTAGTGAAAAGGGTGAAATTATGAAAACAAATACTAAAAATCAAGGGGTGAAGAAAGCAAGAAGCGGTTCACAGTGTGTTGATCATATAATGGCAGAAAGAAAAAGGAGACAAGAATTGACTCAGAGATTCATCGCACTTTCAGCCACCATTCCTGGCTTGAGCAAG 597 0.3618 MECGGDDYFMEKYNAVNIDGDDFLREILLQTPEQSLMEYSGSENGSVTVNVNGDVEVVGNMVKSNSSNSIVSQKQXXXXXXQQRLKSKKVVVPRRCSSPKTYILSFDNSTMIPATPEPCVNLEAGGKRDYCSKSDYSKKNKLESSEKGEIMKTNTKNQGVKKARSGSQCVDHIMAERKRRQELTQRFIALSATIPGLSK 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme47931g00001 199 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 161 198 IPR036638 GO:0046983
Trme47931g00001 199 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 167 199 IPR011598 GO:0046983
Trme47931g00001 199 PANTHER BHLH TRANSCRIPTION FACTOR 35 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme47931g00001 Trme-Chr47931 20 616 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme47931g00001 142 199 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G22750 52.542 1.85e-11 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme47931g00001 - - psat:127105379 157.532