Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme47898g00001 ATGGTTTTGGACAAAAGCAAAGAGGTTCAGGTTTCTTTCAAGATCCCTCATGAACAGGCCGTTTTCGAAATTTCCCACAAGATTTGGGGCAATGACACAGACCATGATGTTTTTGATGTTGATGAATCAAGACATGTTTCTGAAAGTCCTGATCTTATTGACAATGTTAAGATGAAGAATGAATATGTTGACAATTGTGAAGAAACAGATAAAAGGGCGCATAAACGTATGAGGTTAACAACAGATGATGCGAACACAAAAAATGACCAGAACTATGGCGACGTTACTAATATGCATGGCTTCATTGAGGAAACCATGAGGTCCTGTTTCTCACCATTGTTGAAGGAATTGTTGGATGATGCGACTGTTGAGCCACTCGGCGCATTGCCAATGATGTTATCCACCGGGGAAGTGAGGGATGAGCAATGGTTAAAACGGAGGATTTTGGAGCTTGAGGTTTATTTGAATCGGTTGGAGTTGTTGCAGGGTCAGATCAAGGCTAGATTAGAGGAGTTAAAATCTAGCTTAGATTGA 534 0.4082 MVLDKSKEVQVSFKIPHEQAVFEISHKIWGNDTDHDVFDVDESRHVSESPDLIDNVKMKNEYVDNCEETDKRAHKRMRLTTDDANTKNDQNYGDVTNMHGFIEETMRSCFSPLLKELLDDATVEPLGALPMMLSTGEVRDEQWLKRRILELEVYLNRLELLQGQIKARLEELKSSLD 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme47898g00001 177 PANTHER BNAANNG10740D PROTEIN-RELATED 12 171 IPR007592 GO:0006355
Trme47898g00001 177 Coils Coil 155 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme47898g00001 Trme-Chr47898 358 891 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme47898g00001 10 174 GeBP Transcription Factor Family AT5G28040 31.839 3.77e-22 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme47898g00001 - - tpra:123888796 342.428