Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme47862g00001 ATGAAGGAAGGTGAGAAAAGCTTAGATCCACAACTATGGCACGCATGTGCTGGAGGAATGGTTCAAATGCCATCAGTGAACACAAAAGTGTTCTACTTTCCACAAGGGCATGCAGAACATGCACAATCCAATGTTGATTTTGGAGATTCTTTCAGAATTCCACCACTCATACTCTGTCGTGTTGGTTCTGTGAAATTCTTAGCTGACCCTGAAACAGATGAAGTTTTTTCAAAGATAACTTTGATTCCCTTAAGAAATTCAGAGCTTGAAAATGAAGATTCTGATGGTTTTGATGGTAATGCTTCTGAGAATTCAGAAAAGCCTTCATCTTTTGCTAAAACTTTAACTCAATCTGATGCAAACAATGGTGGAGGTTTCTCTGTTCCTAGATACTGTGCWGAAACGATTTTTCCACGGCTTGATTACTCGGCTGAACCACCGGTTCAGACGGTTATCGCGAAGGATGTTCATGGTGAGGTGATTCTATAG 489 0.4049 MKEGEKSLDPQLWHACAGGMVQMPSVNTKVFYFPQGHAEHAQSNVDFGDSFRIPPLILCRVGSVKFLADPETDEVFSKITLIPLRNSELENEDSDGFDGNASENSEKPSSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVIAKDVHGEVIL 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme47862g00001 162 Gene3D - 109 161 IPR015300 -
Trme47862g00001 162 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 159 IPR044835 GO:0003677|GO:0006355|GO:0009725
Trme47862g00001 162 MobiDBLite consensus disorder prediction 90 118 - -
Trme47862g00001 162 MobiDBLite consensus disorder prediction 101 118 - -
Trme47862g00001 162 SUPERFAMILY DNA-binding pseudobarrel domain 106 158 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme47862g00001 Trme-Chr47862 365 950 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme47862g00001 1 160 B3 DNA Binding Superfamily AT4G30080 71.166 7.43e-76 237
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme47862g00001 - - gmx:100778135 273.478