Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme47822g00001 GTTATGTTATTTGGAGCTAGTGATAAATTCGATGGTGATAGGCTTATGCAAATAACAGTAGCATTCAACCACTTTGGTCAAGGATTGATTCAAAGAATGCCTAGGTGCAGGTATGGTTTTGTTCATGTTTTAAACAATGACTATACTCACTGGCAAATGTATGCAATTGGTGGTAGTTCAGGACCAACAATTCTTAGTCAAGGAAACCGATTCATTGCTCCGGATAACGACGCCGCGAAGGAAATCACACATAGAGATTATGCTCCACCTGAAGTTTGGAAGAATTGGCAATGGTCTTCAGAAATGGACTTGTTCATGAATGGTGCTAAGTTTGTTACATCAGGTGCACCTATTAATAGGGCTCCCTACAAGAAAGGGTTTATGATGAAACCAAGAGATGGAACAAATGTTAGTAGACTAACAAGGCATGCTGGTGCCCTAAATTGTATAGTAGGAAGGCCTTGTTAG 468 0.4017 VMLFGASDKFDGDRLMQITVAFNHFGQGLIQRMPRCRYGFVHVLNNDYTHWQMYAIGGSSGPTILSQGNRFIAPDNDAAKEITHRDYAPPEVWKNWQWSSEMDLFMNGAKFVTSGAPINRAPYKKGFMMKPRDGTNVSRLTRHAGALNCIVGRPC 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme47822g00001 155 PRINTS Pollen allergen Amb family signature 54 73 IPR018082 -
Trme47822g00001 155 PRINTS Pollen allergen Amb family signature 96 120 IPR018082 -
Trme47822g00001 155 PRINTS Pollen allergen Amb family signature 126 149 IPR018082 -
Trme47822g00001 155 PRINTS Pollen allergen Amb family signature 32 51 IPR018082 -
Trme47822g00001 155 SUPERFAMILY Pectin lyase-like 1 155 IPR011050 -
Trme47822g00001 155 Gene3D - 1 148 IPR012334 -
Trme47822g00001 155 PANTHER PECTATE LYASE 18-RELATED 1 153 IPR045032 GO:0030570
Trme47822g00001 155 Pfam Pectate lyase 1 71 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme47822g00001 Trme-Chr47822 184 651 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme47822g00001 1 155 Polysaccharide Lyase AT5G15110 58.974 1.85e-64 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme47822g00001 K01728 - gmx:100810615 286.189