Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trme4778g00001 | ATGAATGATTTATTCTCCAGTTCTTTCTCCCGCTTCCGCAGCTCGGATCAAGTCTCACCGGACAACCATCACCATGTGATTGAAATGTCATCACCGACCACCGCACAAAGCGGTGTTCAGCTAGACAAATTCTTCGAAGAAGTTGAAGGAGTTAAAGAGGAATTGAAGGAACTGGATCGCCTCTATGAAAACCTTCGAGCCTCCCATGAGAGGAGCAAGACCCTTCACAGCGCGAAATCTGTGAAGGATATTCGCTCCAAAATGGATGCTGACGTGGCTTTAGCTCTTAAGAAAGCTAAACTTGTTAAACTCCGGCTCGAGGCACTTGACAAGTCCAACGAGGCTAGTAGGAGCTTGCCTGGCGCTGGACCAGGTTCGTCCTCGGACCGGACTAGAACTTCCGTGGTGAGTGGTTTGAGAAAGAAACTTAAAGACTCCATGGATAGCTTTAACGATCTAAGACAACAAATATCCTCTGAATATAGAGAAACCGTGCAACGTAGATACTATACTGTCACCGGAGAGAATCCAGATGACAAAACTGTTGACCTCCTCATTTCAACCGGTGAAAGTGAAACATTTTTACAAAAAGCAATTCAGCAACAAGGAAGAGCAAACNTCATGGACACAATCCAAGAAATTCAAGAGAGACATGACACAGTGAAAGAGATAGAGAGAAATCTAATGGAACTTCACCAAGTGTTTATGGACATGTCTGTTTTGGTTCAATCTCAAGGTGAACAATTAGATAATATTGAAAGCCACGTGGCGCGTGCTAATTCGTACGTTAGAGGTGGGGTCCAACAATTGCATGTTGCTAGGAAGCACCAAAAGAATACAAGAAAATGGACTTGTATTGCCATCATAATTCTTCTCATTATCATCTTGATCATAGTTTTGCCTATTGTCCTAAAAAATTAA | 921 | 0.4278 | MNDLFSSSFSRFRSSDQVSPDNHHHVIEMSSPTTAQSGVQLDKFFEEVEGVKEELKELDRLYENLRASHERSKTLHSAKSVKDIRSKMDADVALALKKAKLVKLRLEALDKSNEASRSLPGAGPGSSSDRTRTSVVSGLRKKLKDSMDSFNDLRQQISSEYRETVQRRYYTVTGENPDDKTVDLLISTGESETFLQKAIQQQGRANXMDTIQEIQERHDTVKEIERNLMELHQVFMDMSVLVQSQGEQLDNIESHVARANSYVRGGVQQLHVARKHQKNTRKWTCIAIIILLIIILIIVLPIVLKN | 306 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trme4778g00001 | 306 | Coils | Coil | 41 | 71 | - | - | |
| Trme4778g00001 | 306 | Pfam | SNARE domain | 247 | 299 | IPR000727 | - | |
| Trme4778g00001 | 306 | Gene3D | - | 39 | 171 | - | - | |
| Trme4778g00001 | 306 | SMART | SynN_4 | 36 | 162 | IPR006011 | GO:0016020 | |
| Trme4778g00001 | 306 | FunFam | Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group | 38 | 168 | - | - | |
| Trme4778g00001 | 306 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 211 | 273 | IPR000727 | - | |
| Trme4778g00001 | 306 | FunFam | Syntaxin 132 | 204 | 304 | - | - | |
| Trme4778g00001 | 306 | Pfam | Syntaxin | 43 | 246 | IPR006011 | GO:0016020 | |
| Trme4778g00001 | 306 | MobiDBLite | consensus disorder prediction | 115 | 135 | - | - | |
| Trme4778g00001 | 306 | MobiDBLite | consensus disorder prediction | 119 | 134 | - | - | |
| Trme4778g00001 | 306 | ProSitePatterns | Syntaxin / epimorphin family signature. | 217 | 256 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 | |
| Trme4778g00001 | 306 | Gene3D | - | 199 | 304 | - | - | |
| Trme4778g00001 | 306 | CDD | SNARE_syntaxin1-like | 210 | 270 | - | - | |
| Trme4778g00001 | 306 | CDD | SynN | 41 | 198 | IPR006011 | GO:0016020 | |
| Trme4778g00001 | 306 | SMART | tSNARE_6 | 206 | 273 | IPR000727 | - | |
| Trme4778g00001 | 306 | PANTHER | SYNTAXIN | 40 | 293 | IPR045242 | - | |
| Trme4778g00001 | 306 | SUPERFAMILY | t-snare proteins | 40 | 266 | IPR010989 | GO:0016020|GO:0016192 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trme4778g00001 | Trme-Chr4778 | 57 | 1316 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trme4778g00001 | 29 | 285 | SNARE and Associated Proteins | AT3G11820 | 73.152 | 1.03e-141 | 400 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trme4778g00001 | K08486 | - | gmx:100793347 | 445.662 |