Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme4775g00001 ATGAATGTATCAATGACAGTTGAAGATTTATTGGCTGAGAATCAACCTCACAGCTTGAATGAAAGTGACGATATCAGGATAGTAGTAGGGCATGTTACTGATTTATTAGACTGGACAAACTTATTTTTATATCAGACGAAGACAGACTTATTTGTTGCGGACCATCCAGTGGGGGTAGAATCTCGTGTACAAGATGTTATTCAACTACTGAACAACCAACATTCAAAAGATTCTCTACTGATTGGGATATGTGGCGTGGCAGGGGTTGGCAAAACAACCCTTGCTAAAGCCGTTTATAATAGAATCCGTCACGATTTTGAGGTGGCAAAGTGCTTCCTCCTAAATGTTGGTGTAGTTTGCGAACAAGATAATGGCAATGTTTCTCTACAACAGCGACTTCACCAGAAGAAGACATTTCTAGTGTTTGACGATGTGAATAGAGTGGACCAATTTAATGCTTTGTGCGGAAGTTTCAAATGGTTTGGTCAAGGAAGTAAAATAATTATCACAACAAGAGATCGTCAAATACTTTGCAACCTTCAAGTTGACTATGTTTATCAAATAAAAGAAATGGATGACGATGAGTCTCTTGAACTTTTTAGTTGGCATGCATTTAAGCAACCAAGTCCTATCCATGGTTTTGCTGAACTTTCTATAGATATTGTTAAGTACTGTGAGGGAATACCACTATTTCTTCAACTCATTGGATCCTTTTTGTTGGCTAGGACAAGTAAAACAGAGTGGGAGAGTGTATTGGGGAAACTCGGTTCAGCTGCTGGTTCAGATTTCGCTAAACTTAAAATAAATTTTGAGGGTTTAAGTGATAATTGTATGAAGGTATTCCTTGATATTTTTCATTTCTGTATTGGGATGGACCAGGAAGATGCAACTAAAATATTGGAAGAATGGAGGCATCGTGTAGATACTGGAATCAATGTCCTTGTACAACAAAGCCTTGTAACTGTCGATTGGATGAACAAGATTAGAATGCATGATTTGATAGAACTAAAAGGAAGGGAAATCATGTGGGAATTGACAAAGGGTGTGTCTAATGTAAGATATGGTTTTTTGAGCGGCTCTACTTGA 1086 0.3775 MNVSMTVEDLLAENQPHSLNESDDIRIVVGHVTDLLDWTNLFLYQTKTDLFVADHPVGVESRVQDVIQLLNNQHSKDSLLIGICGVAGVGKTTLAKAVYNRIRHDFEVAKCFLLNVGVVCEQDNGNVSLQQRLHQKKTFLVFDDVNRVDQFNALCGSFKWFGQGSKIIITTRDRQILCNLQVDYVYQIKEMDDDESLELFSWHAFKQPSPIHGFAELSIDIVKYCEGIPLFLQLIGSFLLARTSKTEWESVLGKLGSAAGSDFAKLKINFEGLSDNCMKVFLDIFHFCIGMDQEDATKILEEWRHRVDTGINVLVQQSLVTVDWMNKIRMHDLIELKGREIMWELTKGVSNVRYGFLSGST 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme4775g00001 361 Pfam NB-ARC domain 60 108 IPR002182 GO:0043531
Trme4775g00001 361 Pfam NB-ARC domain 126 258 IPR002182 GO:0043531
Trme4775g00001 361 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 25 343 IPR044974 GO:0006952
Trme4775g00001 361 PRINTS Disease resistance protein signature 80 95 - -
Trme4775g00001 361 PRINTS Disease resistance protein signature 225 239 - -
Trme4775g00001 361 Gene3D - 47 123 IPR027417 -
Trme4775g00001 361 Gene3D - 190 274 IPR042197 -
Trme4775g00001 361 SUPERFAMILY "Winged helix" DNA-binding domain 266 344 IPR036390 -
Trme4775g00001 361 Gene3D - 124 184 IPR027417 -
Trme4775g00001 361 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 51 283 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme4775g00001 Trme-Chr4775 316 1577 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme4775g00001 57 347 WRKY Transcription Factor Family AT5G45050 32.588 3.12e-40 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme4775g00001 - - tpra:123891787 387.111