Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme47753g00001 CAAGAGCTTGGAGATATTAGGTGTCTGGCACTAGAGAAGGTTGCCGAATCACTTGAGTTACCTTGCAAGTACTATTCTCTTGGATGTCCAGAAATCTTTCCTTACTACAGCAAGCTTAAGCATGAGTTGATATGCAATTTTAGACCATACACTTGTCCTTATGCTGGATCCGAGTGCTCTGCTGTTGGCGATATTTCCTACCTCGTTGCGCATTTGAGGGACGATCATAAGGTGGACATGCACACAGGATGCACATTCAACCATCGTTATGTGAAGTCAAATCCGCGTGAAGTAGAGAATGCTACTTGGATGCTCACTATCGCGTGA 327 0.4465 QELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKLKHELICNFRPYTCPYAGSECSAVGDISYLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTIA 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme47753g00001 108 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 72 IPR013083 -
Trme47753g00001 108 FunFam E3 ubiquitin-protein ligase SINAT3 14 72 - -
Trme47753g00001 108 SUPERFAMILY TRAF domain-like 17 106 - -
Trme47753g00001 108 ProSiteProfiles Zinc finger SIAH-type profile. 17 77 IPR013010 GO:0008270
Trme47753g00001 108 Pfam Seven in absentia protein family 6 107 IPR018121 GO:0005737|GO:0006511|GO:0007275
Trme47753g00001 108 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 2 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme47753g00001 Trme-Chr47753 527 948 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme47753g00001 2 107 C3H Transcription Factor Family AT2G41980 80.189 1.30e-60 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme47753g00001 K04506 - qsa:O6P43_015002 224.557