Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme476728g00001 ATGGCTCCGTCGGCGGAACACAACGCCAATTCCTCCACCGGCGAGTCTCAAAGATCCACTCCAACGCCGTTTCTCACAAAGACATACCATCTCGTTGATGACCGCACCATCAACGACGTCATTTCGTGGAACGATACTGGAACTTCCTTCATCGTTTGGAATCCTACCGTTTTCGCTA 178 0.5112 MAPSAEHNANSSTGESQRSTPTPFLTKTYHLVDDRTINDVISWNDTGTSFIVWNPTVFA 59
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme476728g00001 59 MobiDBLite consensus disorder prediction 1 23 - -
Trme476728g00001 59 Pfam HSF-type DNA-binding 24 58 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trme476728g00001 59 SUPERFAMILY "Winged helix" DNA-binding domain 20 59 IPR036390 -
Trme476728g00001 59 Gene3D - 15 59 IPR036388 -
Trme476728g00001 59 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 14 59 IPR027725 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme476728g00001 13 59 HSF AT5G62020 73.469 5.39e-19 75.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Trme476728g00001 HSF_DNA-bind 2.1e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme476728g00001 K09419 - qsu:111997737 99.7525