Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme475g00001 ATGGCTTTGACAATTGCCAATGCTAATCATTTTTCAAACATTGAAGAAATTAATTCTGAGAAAGCTACTTGGTCCTTCAAAGCGAAAATTATAAGGCTTTGGAAGGTTTCTGATTTCAATCGTAATAACAATCCTTTTTCAATGGAAATGGTTTTAATGGACTCTGAGGGTGGAAAGATTCACGCAACTATTAAGAAAACACTAATCTATAAGTTTAAGGATGACCTTATTGAAGGAAAAGTTTATAGTTTTGAAAATCTGGGTGTTTCTATTAACGGTGGATCTTATCGCACCACTCATCACCCTTATAAGTTGAATTTTCAGTTTGGATCTTTGGTTCAAAGGCTTACTAATTATAAAGTTGAAGCATCTCCATTTAACTTTGTTCCTATTTCTGATGTTGTTGGTGGTTGCTATGACACCGACTTTTTAGTTGATGTTATCGGCGTTCTGACTGGTGTGGGCTCGGAGCGTGAAATCACTAACGGAAATGGAACCACCACTAAGCTCAATGTCATTGCCTTAGAGGCAGAAGGGCATAAGCTTCAGTGTACTTTGTTTGGACCTTACGTTGATGAGCTGAATACTTTCATTGCTTCTGGTGATCACAACAATGCTGTTGTCATTGTTCAACTTGCAAAGGCTAAAACATTTCAAGTTATTGATATGGCCTTTGTAGACAAGATCCATATACAAAACTGTATGAATTGCAGCAAGTTAATCTTTAACCCTGTTTGTCGTGAAAGTACCATCTTGAGGGAAAGCTTGCCTGAAAGTCTTGAGAGTCCTTCTCCAATGACTCTCACTCAAATCCATGCTGAGTCTTCTGTTAGACCAGTGGATGAGTTTCTGTTCAATACACCTAGAATGACTTTGCAAGGCCTGAAAGACGCAACTACTGAATCCCTTAATGTGGTATGTGCTACTGTGAAAAGAATTTTGAACCCAGATTGCTTTTGGTACACTGCCTGTGTTTGTAACAAATCTGTCATACCCGATTCAAACATGTTTTTTTGCGAGAAATGCAACAAGCATGTCTTGAAGGTTTTCCCAAGGTACTGTATGAAAGTGAGGGTTATGGATGACACTGATTCCGCCACGTTTGTTATATTTGACAAAGATGCAAGTTCTTTGTTCAACATGAGTTGTGCTGATATGTTAGGGGCTACTCAAAAGAATGGTGGTGTTGGAGTTGTTCCGCCTCAAATGGCAAGCTTGGTTGATAAGACATGGTTGTTTAAGGTTGAGACAAAACCTTCAAGTAATCCAAGATTTGAGCAAACTTTTAGGGTCAGAAAAATATGCACTGATAATGCCATCATTAAGCAGTTCAAAGATAAGTGGGATAATGAGGAAGCTTCACTTAGCAAGACTGCCAATGAGGTTGGTTCTCTAAGTACTCTGCTGGATAAAGGAAAAGATGTTTTAGTGTGTAGTTCTACCAATATCTTATCTGAGGATTTACTTTCTTTGTCTGGAAGCTGCGGCAAAGGAAAAGGAAAGGAAATAGACATTGAGAGTACTCCTGTTGGAGTAACTGAAGATTTAATGAAGAAATTTTCGTCTGCTGTTGTGGATCTCGGTGATGATTCAGAAGGAACTTTTACTCAAGAAATTGAAAAATCTCTGATATCTTCCAAGGATTTACATGCATTGGCTGGAAGTAGTTCAAAATACAAAGCAAAAGAAATGGTGCTGGAGGCTACTCAAGTTGGAGAAACCCATGAAGTTATGAAGAAAACCAAATCTGATGTTGTCAATGTTGCTGATTATGCCATTGAATCTGAAAAGTCTGTGATAACTTATAAGGAAGGAAAACCATCTGACATGGTCCTTCATGGTACTCCTGTTGGACAAAGAAAGAATTGTGAGAAGATGATTGCTTCTGGTGGTATCAACCTTGCTGATGGTTCTGTTGAATCTGAGAAAGCTTTTACCAGTCCCAACCAAGTTAAAGCAGATGATTATCATGGTGTCAAGCCCAAGAAGGGGGGTAAGAGACTTTCTCCACAGCAAGAAGATGAAGATGACAATGCACCAATTAAGCTTTTGAAACGAGCTATCAAGATAGAGAAAATTGCTTAG 2085 0.3847 MALTIANANHFSNIEEINSEKATWSFKAKIIRLWKVSDFNRNNNPFSMEMVLMDSEGGKIHATIKKTLIYKFKDDLIEGKVYSFENLGVSINGGSYRTTHHPYKLNFQFGSLVQRLTNYKVEASPFNFVPISDVVGGCYDTDFLVDVIGVLTGVGSEREITNGNGTTTKLNVIALEAEGHKLQCTLFGPYVDELNTFIASGDHNNAVVIVQLAKAKTFQVIDMAFVDKIHIQNCMNCSKLIFNPVCRESTILRESLPESLESPSPMTLTQIHAESSVRPVDEFLFNTPRMTLQGLKDATTESLNVVCATVKRILNPDCFWYTACVCNKSVIPDSNMFFCEKCNKHVLKVFPRYCMKVRVMDDTDSATFVIFDKDASSLFNMSCADMLGATQKNGGVGVVPPQMASLVDKTWLFKVETKPSSNPRFEQTFRVRKICTDNAIIKQFKDKWDNEEASLSKTANEVGSLSTLLDKGKDVLVCSSTNILSEDLLSLSGSCGKGKGKEIDIESTPVGVTEDLMKKFSSAVVDLGDDSEGTFTQEIEKSLISSKDLHALAGSSSKYKAKEMVLEATQVGETHEVMKKTKSDVVNVADYAIESEKSVITYKEGKPSDMVLHGTPVGQRKNCEKMIASGGINLADGSVESEKAFTSPNQVKADDYHGVKPKKGGKRLSPQQEDEDDNAPIKLLKRAIKIEKIA 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme475g00001 694 CDD RPA1_DBD_C 306 418 IPR047192 -
Trme475g00001 694 Gene3D - 284 443 IPR012340 -
Trme475g00001 694 PANTHER OS03G0429900 PROTEIN 12 424 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Trme475g00001 694 SUPERFAMILY Nucleic acid-binding proteins 289 434 IPR012340 -
Trme475g00001 694 Gene3D - 9 115 IPR012340 -
Trme475g00001 694 Gene3D - 121 262 IPR012340 -
Trme475g00001 694 CDD RPA1_DBD_B_like 146 248 - -
Trme475g00001 694 SUPERFAMILY Nucleic acid-binding proteins 126 257 IPR012340 -
Trme475g00001 694 Pfam Replication factor-A C terminal domain 308 418 IPR013955 -
Trme475g00001 694 Pfam Domain of unknown function DUF223 49 144 IPR003871 -
Trme475g00001 694 MobiDBLite consensus disorder prediction 646 680 - -
Trme475g00001 694 SUPERFAMILY Nucleic acid-binding proteins 11 116 IPR012340 -
Trme475g00001 694 CDD RPA1_DBD_A_like 27 113 - -
Trme475g00001 694 MobiDBLite consensus disorder prediction 655 680 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme475g00001 Trme-Chr475 826 3919 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme475g00001 17 434 Core DNA Replication Machinery Family AT5G08020 22.936 4.29e-18 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme475g00001 - - tpra:123915045 910.212