Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme47598g00001 ATGTGGTATGGTGTCGCTGCAAAAGATGCATGCAAATTGGAAGAGGTCATGAGAAAGCATTTACCTGAACTCTTTGAAGAACAACCTGACTTGCTTCATAAGCTGGTCACACAACTTTCTCCTTCTATTCTTAAGTCTAAAGGTGTGCCAGTTTATAGGTGTGTCCAAAACCCTGGGGACTTTGTTCTGACATTTCCTCGAGCCTACCACTCTGGGTTCAATTGTGGCTTCAACTGTGCTGAGGCTGTTAACGTAGCTCCTGTTGACTGGCTGCGCCATGGGCATATTGCTATAGACCTGTACCGGGAGCAGAGGCGCAAGACTTCCATATCTCATGATAAGCTATTGCTTGGGGCTGCTAGGGAAGCAGTACGAGCCCAGTGGGAGATCACTTTGCTTAAGAAAAACAC 410 0.4683 MWYGVAAKDACKLEEVMRKHLPELFEEQPDLLHKLVTQLSPSILKSKGVPVYRCVQNPGDFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLRHGHIAIDLYREQRRKTSISHDKLLLGAAREAVRAQWEITLLKKNT 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme47598g00001 137 ProSiteProfiles JmjC domain profile. 1 102 IPR003347 -
Trme47598g00001 137 PANTHER LYSINE-SPECIFIC DEMETHYLASE 1 128 - -
Trme47598g00001 137 Pfam JmjC domain, hydroxylase 2 85 IPR003347 -
Trme47598g00001 137 Gene3D Cupin 1 136 - -
Trme47598g00001 137 SMART cupin_9 1 102 IPR003347 -
Trme47598g00001 137 SUPERFAMILY Clavaminate synthase-like 2 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme47598g00001 Trme-Chr47598 322 977 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme47598g00001 1 137 JUMONJI Transcription Factor Family AT1G08620 80.292 6.66e-74 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trme47598g00001 JmjC 2.4e-28 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme47598g00001 K11446 - gmx:100809262 269.626