Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme47588g00001 ATGGAAATGATGACCTATGAGACGAGTGATCAACACAAGCGTGTAAGGGATGCAAAAAACAAGTCATCAAATGGGAGAGAACTTTCAAGGGTGTTTTCTGAAGATTATGATGCAGAAGAGATTTTAATATTAGATCCTAGAGGACCTAGAGTAAATTTATGGAACAAAATATTCTTAGCAGCTTGTTTGATTTCATTGTTTGTGGATCCACTTTTCTTTTACTTACCAGTTGTTAAGAAAGAAAAATGCATTGATATGTCACTTGGTCTTGAAGTTTCACTTACAATAATTAGGACATTGGTTGATGCATTTTACATTATTCAGATTTATGTTAGGTTTCAAACTGCTTATATTGCTCCTTCGTCTCGTGTTTCTGGTAGAGGAGAACTTATTATAGATTCATCAAAGATTGCTTCAAATTATATGAGTAGAGACTTTTGGTTTGATCTTGTTGCTGCTCTACCACTTCCTCAG 474 0.3439 MEMMTYETSDQHKRVRDAKNKSSNGRELSRVFSEDYDAEEILILDPRGPRVNLWNKIFLAACLISLFVDPLFFYLPVVKKEKCIDMSLGLEVSLTIIRTLVDAFYIIQIYVRFQTAYIAPSSRVSGRGELIIDSSKIASNYMSRDFWFDLVAALPLPQ 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme47588g00001 158 Pfam Ion transport protein 53 157 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Trme47588g00001 158 MobiDBLite consensus disorder prediction 1 22 - -
Trme47588g00001 158 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 16 158 - -
Trme47588g00001 158 SUPERFAMILY Voltage-gated potassium channels 45 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme47588g00001 Trme-Chr47588 473 946 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme47588g00001 18 158 Ion Channels AT2G28260 63.121 1.49e-56 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme47588g00001 K05391 - gmx:100804375 250.751