Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme47550g00001 ATGGCTGTGGCGGCGGCGGAGAAGGAAGAACCGATTAGGGTTTCTGAAAAGGAGCTGCTCAACGCGGTGGCGGATAATCCACCGGTGATATTCTCCCANNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNAACTCGGGATCTTCCTCCGAGGAATCGGTGATAATCGGGGAGAGTCCAGGAACGCCTTTACCTTTCACGCTTCGTCCAACGTGTTTCTCTCCTTCTTCATCTTCCTCGTTCGAGATCGAAGTTCAAAACCCTAACGTTCCTCCTTCGGAAGAAGAAGAAACTCTACTGAAGAAGCTGAAGAGCAACGAGGTTTTTGAACAAGAGCAAGGAGTGATTACTCTTAGAAGTATCACTAGGAACAGAGAAGAAGCTAGGGTTTCGCTATGTACGTCGCGGATTCTCGCGATTCTGCGTTCTCTGATTGCTTCCCGTTACGTCGTCGTTCAGGTCAACGCTATTGCTTCTTTGGTCAACCTTTCCCTTGAGAAATCGAACAAGATGAGAATTGTGCGGTCAGGATTTGTTCCGCTTCTCATTGATGTGTTGAAGGGGGGATCTAGTGAGTCGCAGGAACATGCTGCGGGTGCACTGTTTAGTTTGGCTTTGGATGATGATAACAAGATGGCGATCGGTGTTCTCGGTGCGTTGCAGCCGCTAATGCATGCGCTGAGGTCTGATTCCGAGCGAACTCGCCATGACTCGGCGCTTGCACTCTATCATTTGACGCTAGTTCAGAGTAACAGAGTCAAGCTTGTGAAACTCGGGGTGGTTCCGACTTTGCTTTCGATGGTGATGACAGGGACAATGGCGAGTAGGGTGTTGTTGATTCTGTGCAATCTTGCTATGTCT 864 0.4734 MAVAAAEKEEPIRVSEKELLNAVADNPPVIFSXXXXXXXXXXXXXNSGSSSEESVIIGESPGTPLPFTLRPTCFSPSSSSSFEIEVQNPNVPPSEEEETLLKKLKSNEVFEQEQGVITLRSITRNREEARVSLCTSRILAILRSLIASRYVVVQVNAIASLVNLSLEKSNKMRIVRSGFVPLLIDVLKGGSSESQEHAAGALFSLALDDDNKMAIGVLGALQPLMHALRSDSERTRHDSALALYHLTLVQSNRVKLVKLGVVPTLLSMVMTGTMASRVLLILCNLAMS 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme47550g00001 288 PANTHER U BOX DOMAIN-CONTAINING 89 286 - -
Trme47550g00001 288 Gene3D - 93 288 IPR011989 -
Trme47550g00001 288 SMART arm_5 167 207 IPR000225 GO:0005515
Trme47550g00001 288 SMART arm_5 208 248 IPR000225 GO:0005515
Trme47550g00001 288 SMART arm_5 126 166 IPR000225 GO:0005515
Trme47550g00001 288 SUPERFAMILY ARM repeat 97 286 IPR016024 -
Trme47550g00001 288 MobiDBLite consensus disorder prediction 42 61 - -
Trme47550g00001 288 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 178 215 IPR000225 GO:0005515
Trme47550g00001 288 Pfam Armadillo/beta-catenin-like repeat 208 247 IPR000225 GO:0005515
Trme47550g00001 288 Pfam Armadillo/beta-catenin-like repeat 170 206 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme47550g00001 Trme-Chr47550 1 864 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme47550g00001 12 286 U-box Gene Family AT5G65200 61.268 1.54e-108 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme47550g00001 - - gmx:100784564 396.741