Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme47526g00001 ATGGGAGCAACAAATGTTGTCAAATGCAAAAGAAGAAGAATGGTTGATAAAAGTTCAATTACTCGCGAATCGAGTAAATTCGATTCGCCTGATCTAAATTGGACTAACATGATTCCAGAATGTCCAATATATCATCCATCACAACAAGAATTTGAGCATCCTTTGGTTTATTTACAGAAAATTGCTCCTGAGGCTTCTAAATATGGTATATGTAAAATTGTTTCTCCAATTACTGCTACTAATCCTGCTGATTATGTCTTAATGAAAGAGAAAAAGGATTTTAAGTTTGAAACAATTGTACAGCCTCTTCGCCTTTCGAAATGGAATGAGAAGGATATGATAACTTTTTCTAAGAGAGGAAGTTCGGAAGGTCTTTCTTCTTCGGATATCGAAAAAGCATTCTGGCACGAAATGATACGTGGAGAGAAAGGTGCAGTCGAGTATGGAGTCAACATTGAGGGAAGTGTCTTTTCATGTGATCCTGATGATAAACTTGGAACAAGCAAATTCAATTTGAAGGTTTCTTTTTATAATTCATACTTGCTAAATTCATTCTTAATGATTCTCAAAATCTTTAACTATTGA 585 0.3436 MGATNVVKCKRRRMVDKSSITRESSKFDSPDLNWTNMIPECPIYHPSQQEFEHPLVYLQKIAPEASKYGICKIVSPITATNPADYVLMKEKKDFKFETIVQPLRLSKWNEKDMITFSKRGSSEGLSSSDIEKAFWHEMIRGEKGAVEYGVNIEGSVFSCDPDDKLGTSKFNLKVSFYNSYLLNSFLMILKIFNY 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme47526g00001 194 Gene3D Cupin 28 187 - -
Trme47526g00001 194 ProSiteProfiles JmjN domain profile. 41 82 IPR003349 -
Trme47526g00001 194 PANTHER LYSINE-SPECIFIC DEMETHYLASE 34 174 - -
Trme47526g00001 194 SMART JmjN_1 40 81 IPR003349 -
Trme47526g00001 194 Pfam jmjN domain 42 74 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme47526g00001 Trme-Chr47526 47 913 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme47526g00001 33 124 C2H2 Transcription Factor Family AT5G04240 31.522 1.91e-10 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trme47526g00001 JmjN 2.2e-13 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme47526g00001 - - cam:101502558 261.536