Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme4744g00001 ATGGAAATACCTAAACCAAAGGAATTTCGGAAGCAACGACGACTCCCAGAAGAAGAAGAAGATGAAATTAACCTCTTGAATTCATGGATTCAATCTCAGAAACCAGACTCCGGTACCAACCCAATGTCTCTACCACTTCTCCCCAAAACGTCCCCCGTCGGTCGCCTCGACGACAATACCTTCTCTCGCTACGCCGGCGTGCTGCGGTTTGAGCAGTTGCCATTGTCGAAGAAAACCAAAGACGCGTTGCGATCTTCGAACTATGTTTTCATGGCTGATATTCAAAGAGCTTCTCTTCCTCATGCACTTTGTGGTCGTGATGTTCTTGGCGCCGCCAAAACTGGCCCTGGAAAAATATTTGCTTTCATTATCCCTGTTTTGGAGAAACTGTATAGAGAGAGATGGGGACCTGAAGATGGGATTGGTAGCATCATCATATCACCTACAAGAGACTTAGCTGATCTGATATTTCTTGTGTTGGAGTATATTGGGAAGTACCACGGTTTTAGTGCTGGCCTCCTCATTGGTGGTCGTAAGGATGTTGCCATGGAGAAAGAACGTGTTAACAAGCTCAACATATTGATCTGCACACCCGATCGCCTTCTACAACACATGGATGAAACTTCCAACTTTGACTGTTCACAGATGCAGGTTTTGGTACTAGATGAGGCTGATCATATTCTAGATAGTGGGTTCGAGAAGCAACTAAATGCAATCATCTCACGATTACCAAAGTGTAGACAGACCATGCTTTTCTCGGCAACTCAAACAAAGTCGGTTCAAGATCTCGCTAGATTAAGTTTGAAGGACCCAGAGTATCTTATTGCACTCGAAGAGTCTTGGATTGCCACTCCTTTTTAG 861 0.4472 MEIPKPKEFRKQRRLPEEEEDEINLLNSWIQSQKPDSGTNPMSLPLLPKTSPVGRLDDNTFSRYAGVLRFEQLPLSKKTKDALRSSNYVFMADIQRASLPHALCGRDVLGAAKTGPGKIFAFIIPVLEKLYRERWGPEDGIGSIIISPTRDLADLIFLVLEYIGKYHGFSAGLLIGGRKDVAMEKERVNKLNILICTPDRLLQHMDETSNFDCSQMQVLVLDEADHILDSGFEKQLNAIISRLPKCRQTMLFSATQTKSVQDLARLSLKDPEYLIALEESWIATPF 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme4744g00001 286 SMART ultradead3 87 285 IPR014001 -
Trme4744g00001 286 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 63 274 IPR027417 -
Trme4744g00001 286 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 99 274 IPR014001 -
Trme4744g00001 286 Pfam DEAD/DEAH box helicase 93 263 IPR011545 GO:0003676|GO:0005524
Trme4744g00001 286 CDD DEADc_DDX10 79 273 - -
Trme4744g00001 286 Gene3D - 56 278 IPR027417 -
Trme4744g00001 286 PANTHER RNA HELICASE 67 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme4744g00001 Trme-Chr4744 565 2050 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme4744g00001 95 271 Eukaryotic Initiation Factors Gene Family AT1G72730 30.556 8.06e-15 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme4744g00001 K14776 - gmx:100820055 452.595