Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme473915g00001 ATGATAGGAGATGGCATTAATGATGCACCAGCATTAGCTACTGCAGACATAGGCATCTCAATGGGAATTTCTGGTACAGCTCTTGCAAACGAGACAAGTAACGCGATTCTCATGTCAAATGACATCCGAAAAGTGCCCGAAGCAATTCGTTTAGCGAGAAAAACAACTCGAAAGCTCATAGAAAATGTCGTTATTTCGGTTGGATTCAAATGTGCCATACTTGCATTGGCAATTGCAGGATATCCATTGGTTT 253 0.415 MIGDGINDAPALATADIGISMGISGTALANETSNAILMSNDIRKVPEAIRLARKTTRKLIENVVISVGFKCAILALAIAGYPLV 84
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme473915g00001 84 Gene3D - 1 70 IPR023214 -
Trme473915g00001 84 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED 1 84 - -
Trme473915g00001 84 PRINTS P-type cation-transporting ATPase superfamily signature 26 38 - -
Trme473915g00001 84 PRINTS P-type cation-transporting ATPase superfamily signature 2 21 - -
Trme473915g00001 84 PRINTS H+-transporting ATPase (proton pump) signature 34 59 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trme473915g00001 84 PRINTS H+-transporting ATPase (proton pump) signature 2 18 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trme473915g00001 84 SUPERFAMILY HAD-like 1 81 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme473915g00001 Trme-Chr473915 1 253 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme473915g00001 1 84 Primary Pumps ATPases AT4G30110 71.429 2.75e-36 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme473915g00001 K01534 - gmx:100815324 149.443