Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme4734g00001 ATGATAGTAATTCCATTGCTTCAACAACGGGGTAAGATTGAGAATGGTTTAATTGCAGCTCAGCATAGGGCAGTTGCAAGGAAAATAACACAGGCCAAGACTGTCCAAGGAGTTTTAGGAATGGACATAGAAAGAGTCAAAGCGATACAGAATAGGATTGATGAATTCACCAACAACATGTCAGAACTTCTCAATATTGAAAGGGATGTTGAATTGGAGTTTACTCAGGAAGAATTGGATGCGGTTCCTAGACCAGATGATGCTTCTGATCCGTCGAAACCGATTGAATTCTTGGTTAGCCATAGCCAACCTCAGCAAGAACTCTGTGACACCATTTGTAATTTAAATGCCATCAGTACCTCTACAGGATTGGGGGGAATGCATTTGGTGTTATTCAAGATTGAAGGAAACCACCGATTGCCACCGACTACTCTTTCACCTGGAGAAATGGTTTGTGTGAGAACGTGTGATAGCAGGGGCGCAGTTAATACTTCTTGCATGCAAGGAGTTGTGGACAATCTCGGTGATGATGGGTATAGTATTACCGTTGCTTTAGAGTCACGTCATGGTGATCCTACTTTCTCTAAACTATTTGGGAAGAATGTGCGCATTGATCGTATTCAAGGACTGGCTGATACACTTACCTATGAGCGCAACTGTGAAGCACTAATGCTGCTTCAGAAGAACGGCTTACGAAAGAAAAATCCGGCTATTTCTGTTGTTGCAACTCTATTCGGAGAGGGAGAAGATGCTGCATGGCTTGAGAAGAATAGTTTGGTCGACTGGGAAGAAGAAAAAATGGATGGAACATTAGAAAGTGAATCCTTTGACAAATCTCAGCAGAGAGCAATTGCATTAGGTTTGAATAAGAAGAGGCCATTATTGGTCATTCAAGGGCCTCCCGGTACTGGCAAGACCGGTTTGCTCAAACAACTAATAGCATTTGCCGTTGAACAAGGTGAAAGGGTTCTTGTTACAGCGCCTACCAATGCAGCTGTTGATAATATGGTTGAAAAGCTTTCAAATGTTGGAATAAATATTGTTCGGGTTGGAAATCCAGTTCGTATATCAAAAACAGTAGCATCAAAGTCTTTGGCAGAAATTGTAAATGCGAAGATGGCACCTTTTCGCGAAGAGTTTGAGAGGAAGAAGTCTGATCTAAGGAAAGATCTAAGGCATTGTTTAAAGGATGATTCATTGGCTGCAGGCATACGCCAACTTCTGAAAAAGCTGGCAAAGTCACTAAAGAAACAGGAAAAGCAGACGATAAATGAAGTTTTATCAAGTGCTCA 1292 0.4172 MIVIPLLQQRGKIENGLIAAQHRAVARKITQAKTVQGVLGMDIERVKAIQNRIDEFTNNMSELLNIERDVELEFTQEELDAVPRPDDASDPSKPIEFLVSHSQPQQELCDTICNLNAISTSTGLGGMHLVLFKIEGNHRLPPTTLSPGEMVCVRTCDSRGAVNTSCMQGVVDNLGDDGYSITVALESRHGDPTFSKLFGKNVRIDRIQGLADTLTYERNCEALMLLQKNGLRKKNPAISVVATLFGEGEDAAWLEKNSLVDWEEEKMDGTLESESFDKSQQRAIALGLNKKRPLLVIQGPPGTGKTGLLKQLIAFAVEQGERVLVTAPTNAAVDNMVEKLSNVGINIVRVGNPVRISKTVASKSLAEIVNAKMAPFREEFERKKSDLRKDLRHCLKDDSLAAGIRQLLKKLAKSLKKQEKQTINEVLSSA 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme4734g00001 430 FunFam DNA-binding protein SMUBP-2 isoform X2 79 210 - -
Trme4734g00001 430 PANTHER DNA2/NAM7 HELICASE FAMILY MEMBER 20 430 - -
Trme4734g00001 430 Coils Coil 377 397 - -
Trme4734g00001 430 Pfam AAA domain 276 421 IPR041677 GO:0004386
Trme4734g00001 430 Coils Coil 401 421 - -
Trme4734g00001 430 Gene3D - 196 430 IPR027417 -
Trme4734g00001 430 Gene3D - 102 195 - -
Trme4734g00001 430 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 272 350 IPR027417 -
Trme4734g00001 430 Coils Coil 46 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme4734g00001 Trme-Chr4734 364 2180 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme4734g00001 274 351 Core DNA Replication Machinery Family AT1G08840 35.897 7.84e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme4734g00001 - - pvu:PHAVU_007G280900g 697.967