Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme47278g00001 ATGCTAGAAAAGAAATTGGCTGATGCCGAAGTCTCCGAGGAAGAGCAGAATAATTTGCTTAAGTATTTGGAGAAAAAGGAGACAGAAATCATGCGCCTTCAGAGACATAAGATGGGTGCTGATGACTTTGAGCCCCTAACTATGATCGGAAAAGGTGCATTTGGAGAGGTTAGAGTCTGCCGGGAGAAGGCAACTGGTCATGTATATGCTATGAAGAAGCTTAAGAAATCAGAGATGCTTCGTAGAGGACAGGTTGAACATGTCAAGGCTGAGAGGAACCTTCTTGCAGAAGTTGATAGCAATTGCATTGTAAAACTTTATTGTTCCTTTCAAGATGACGAGTATTTATATCTCATAATGGAGTATCTACCTGGTGGAGATATGATGACGTTGCTGATGCGGAAAGATATACTGACTGAAGATGAAGCTAG 431 0.4153 MLEKKLADAEVSEEEQNNLLKYLEKKETEIMRLQRHKMGADDFEPLTMIGKGAFGEVRVCREKATGHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSNCIVKLYCSFQDDEYLYLIMEYLPGGDMMTLLMRKDILTEDEA 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme47278g00001 143 FunFam Non-specific serine/threonine protein kinase 14 126 - -
Trme47278g00001 143 Pfam Protein kinase domain 45 143 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme47278g00001 143 SUPERFAMILY Protein kinase-like (PK-like) 24 142 IPR011009 -
Trme47278g00001 143 Gene3D Phosphorylase Kinase; domain 1 1 143 - -
Trme47278g00001 143 PANTHER SERINE/THREONINE-PROTEIN KINASE 18 143 - -
Trme47278g00001 143 ProSiteProfiles Protein kinase domain profile. 43 143 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme47278g00001 143 ProSitePatterns Protein kinases ATP-binding region signature. 49 72 IPR017441 GO:0005524
Trme47278g00001 143 SMART serkin_6 43 143 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme47278g00001 Trme-Chr47278 67 773 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme47278g00001 1 143 AGC Kinase Gene Family AT4G14350 93.007 3.41e-90 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Trme47278g00001 Pkinase 9.2e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme47278g00001 K08790 - pvy:116129446 281.182