Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme47269g00001 ATGTGTGCAATATGTGGAGATGGAGGAGATTTGATTCTTTGCAATGGATGTCCTAGAGCCTTTCATGCAGCCTGCTTAGGATTACACAGTGTACCAGATAGTGGTTGGCATTGTCTAAATTGTAAAGATAATACTGGTGATGGAAGAGGTGCGAGGCCAATCATGATTCGGTTGACACGGGTTGATAAAGAACCAGAATATGAAATGGGTGGATGTGTTGTTTGCAG 227 0.4273 MCAICGDGGDLILCNGCPRAFHAACLGLHSVPDSGWHCLNCKDNTGDGRGARPIMIRLTRVDKEPEYEMGGCVVC 75
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme47269g00001 75 Pfam PHD-finger 1 43 IPR019787 -
Trme47269g00001 75 SMART PHD_3 1 42 IPR001965 -
Trme47269g00001 75 PANTHER AUTOIMMUNE REGULATOR 1 75 - -
Trme47269g00001 75 ProSitePatterns Zinc finger PHD-type signature. 2 41 IPR019786 -
Trme47269g00001 75 SUPERFAMILY FYVE/PHD zinc finger 1 48 IPR011011 -
Trme47269g00001 75 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 49 IPR013083 -
Trme47269g00001 75 ProSiteProfiles Zinc finger PHD-type profile. 1 44 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme47269g00001 Trme-Chr47269 289 866 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme47269g00001 1 75 PHD Transcription Factor Family AT3G53680 53.659 9.82e-27 99.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trme47269g00001 PHD 1.6e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme47269g00001 - - tpra:123904992 165.622