Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme47252g00001 TTTTTAGGTTTTACTTGGAAAAATCCTGAAATTGTGATGACAACGGCAATTGCGATAGAGGATGTAAGAAGAGAAGTGAAGATATTGCGAGCTCTAACCGGTCACAAGAATTTGGTACAATTCTATGAAGCCTATGAAGACGATGAAAATGTTTATGTAGTTATGGAGTAA 171 0.3567 FLGFTWKNPEIVMTTAIAIEDVRREVKILRALTGHKNLVQFYEAYEDDENVYVVME 56
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme47252g00001 56 ProSiteProfiles Protein kinase domain profile. 1 56 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme47252g00001 56 Gene3D Phosphorylase Kinase; domain 1 7 56 - -
Trme47252g00001 56 SUPERFAMILY Protein kinase-like (PK-like) 15 56 IPR011009 -
Trme47252g00001 56 PANTHER SERINE/THREONINE-PROTEIN KINASE 14 56 - -
Trme47252g00001 56 FunFam CDPK-related kinase 1 14 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme47252g00001 Trme-Chr47252 185 526 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme47252g00001 9 56 EF-hand Containing Proteins AT1G49580 77.083 1.81e-21 83.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Trme47252g00001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme47252g00001 K13412 - bvg:104889509 91.2781