Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme47171g00001 AAAGATAATCCTAGGAAGGTTATTGTTAGCATAGTTTTAGGAGCAGTCACTGGATTAATTGGTTCTGTTCTCTTTGCATTTGTGATTCGTTGTATTGTTCGGTATCTAAACCGAACACCAATCCTCAAAGGACCTGTCATATTCTCCCCAAAAATTGCCTCAAAGACACTCCAAATAGCTTTGTCAAAAGAAAACCATTTGCTTGGTTCAAGTCCAAATGGGAAATACTACAAAACTGTTCTTGAAAATGGTCTCACAATTGCAGTCAAAAGGCTAACACCCTTTGAGAGCAATTCACCAGAGAGTAGGAGAAAATCAGTGAAGAGGCAAATACAGATGGAGCTAGAGCTTCTTGCTAGCTTAAGACATAGGAATTTGATGAGTTTAAGGGCTTATGTTCGCGAAAATGATGGATTCTCTTTGGTTTATGATTATGTATCAACTGGTAGTCTTGCAGATGTGATGAATAGAGTGAGGGAAAATGAGTTGCAGATTGGTTGGGAAGTTAGGTTAAGAATTGCTGTTGGTGTGGTGAAGGGTCTTCAATATCTTCATTTCACTTGTGTGCCTCAGATTTTGCATTTCAATTTGAAGCCTACTAATGTGATGTTGGATGCTGAGTTTGAACCTAGATTGGCAGATTATGGATTGGCTAAACTTCTACCAAACTTAGATAGAGGGATATCTCTCAACACCCCTCCTGAATGTTTGCATAATCGCAG 722 0.3892 KDNPRKVIVSIVLGAVTGLIGSVLFAFVIRCIVRYLNRTPILKGPVIFSPKIASKTLQIALSKENHLLGSSPNGKYYKTVLENGLTIAVKRLTPFESNSPESRRKSVKRQIQMELELLASLRHRNLMSLRAYVRENDGFSLVYDYVSTGSLADVMNRVRENELQIGWEVRLRIAVGVVKGLQYLHFTCVPQILHFNLKPTNVMLDAEFEPRLADYGLAKLLPNLDRGISLNTPPECLHNR 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme47171g00001 240 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 7 225 - -
Trme47171g00001 240 Gene3D Transferase(Phosphotransferase) domain 1 146 239 - -
Trme47171g00001 240 FunFam Inactive leucine-rich repeat receptor-like protein kinase CORYNE 54 145 - -
Trme47171g00001 240 ProSiteProfiles Protein kinase domain profile. 62 240 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme47171g00001 240 SUPERFAMILY Protein kinase-like (PK-like) 65 228 IPR011009 -
Trme47171g00001 240 Gene3D Phosphorylase Kinase; domain 1 49 145 - -
Trme47171g00001 240 Pfam Protein kinase domain 64 223 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme47171g00001 Trme-Chr47171 260 981 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme47171g00001 8 223 Receptor kinase-like Gene Family AT2G31880 34.498 6.23e-38 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-2 Trme47171g00001 Pkinase 1.1e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme47171g00001 - - gmx:102664273 428.328