Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme4713g00001 ATGAATGAAGATCTTGAAGAGCTGAAGGAACTAGGTTCTGGTACCTTTGGAACTGTATATCATGGAAAATGGCGAGGAACAGACGTTGCCATTAAGAGAATAAAGAAAACCTGCTTCACTGGTCGATCATCTGAGCAAGAGAGACTGACTGTTGAGTTCTGGCGGGAAGCTGACATTCTTTCCAAGCTTCATCATCCAAATGTTGTGGCATTTTATGGCGTGGTGCAAAATGGACCAGGAGGAACAATGGCAACCATTACGGAGTATATGGTGGATGGTTCTCTTAGGCATGTATTGCTACGTAAGGATAGGGGTGTGGAGTGGGTGGTTGATGACGCTACTGTGCATCCTGGGGCATCGCGTATGGATGGTGGGGAAGGAGCAGCCACTTTTCTCCTTAAGTTGAGGTATCTTGATCGTCGCAAGAGGCTGATAATTGCAATGGATGCAGCTTTTGGAATGGAATATTTGCACTCCAAAAATATTGTGCATTTCGACTTAAAATGTGACAATTTACTTGTAAACTTAAAAGATCCATTAAGGCCAATATGCAAGGTTGGTGATTTTGGTTTGTCAAAAATTAAACGAAATACCTTGGTTTCTGGTGGAGTGCGAGGCACTCTACCTTGGATGGCACCAGAGCTGCTCAACGGTAGCAGCAGCAAGGTCTCNGAAAAG 678 0.4425 MNEDLEELKELGSGTFGTVYHGKWRGTDVAIKRIKKTCFTGRSSEQERLTVEFWREADILSKLHHPNVVAFYGVVQNGPGGTMATITEYMVDGSLRHVLLRKDRGVEWVVDDATVHPGASRMDGGEGAATFLLKLRYLDRRKRLIIAMDAAFGMEYLHSKNIVHFDLKCDNLLVNLKDPLRPICKVGDFGLSKIKRNTLVSGGVRGTLPWMAPELLNGSSSKVSEK 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme4713g00001 226 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 1 92 - -
Trme4713g00001 226 Gene3D Phosphorylase Kinase; domain 1 1 93 - -
Trme4713g00001 226 Gene3D Transferase(Phosphotransferase) domain 1 121 226 - -
Trme4713g00001 226 SMART serkin_6 5 226 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme4713g00001 226 ProSitePatterns Serine/Threonine protein kinases active-site signature. 162 174 IPR008271 GO:0004672|GO:0006468
Trme4713g00001 226 PANTHER SERINE-THREONINE PROTEIN KINASE 2 223 - -
Trme4713g00001 226 ProSitePatterns Protein kinases ATP-binding region signature. 11 36 IPR017441 GO:0005524
Trme4713g00001 226 PIRSF ILK 128 222 - -
Trme4713g00001 226 PIRSF ILK 1 114 - -
Trme4713g00001 226 Pfam Protein tyrosine and serine/threonine kinase 6 219 IPR001245 GO:0004672|GO:0006468
Trme4713g00001 226 SUPERFAMILY Protein kinase-like (PK-like) 3 219 IPR011009 -
Trme4713g00001 226 ProSiteProfiles Protein kinase domain profile. 5 226 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme4713g00001 Trme-Chr4713 257 1696 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme4713g00001 1 226 MAP Kinase Kinase Kinase AT1G16270 78.761 1.71e-122 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Trme4713g00001 PK_Tyr_Ser-Thr 9e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme4713g00001 - - aip:107612789 374.015