Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme47009g00001 ATGTTCGAAAAACCATTAACACCATCTGACGTAGGTAAACTTAACCGTCTTGTTATCCCAAAACAATACGCGGAAAAATACTTCCCTCTCGGCGGAGTCAGTGACTCCGCCGAGTGCAAAGGGTTGTTACTGAGTTTCGAAGACGAATCAGGAAAGTGTTGGCGATTCCGTTACTCTTATTGGAACAGTAGTCAAAGCTATGTTTTGACTAAAGGTTGGAGTAGATATGTTAAAGATAAACGTCTTGATGCTGGTGACGTTGTTTTGTTTGAACGACACCGTTTTGATAGTCAGAGACTTTTTATTAACTGGAGGAGGAGGTTGAGTGGGGAGGATCAGTCGGCGGCGTATGTTAGTAGAGCGGTGGTGGGAGGACATGGTGGTAAAAGTAGTAGTAATGGGGGTGGGAATAGTAAAAATGAGGTTGTTAGTGGTGTGGGTGTTGGGTGGTCCAGAGGATTCTATTCTGCGCATGTTCCTTATCCTGCGCATCATCAGGTTTTGCCGTATCAACATGATCACTGTCTTCATGCAG 535 0.4467 MFEKPLTPSDVGKLNRLVIPKQYAEKYFPLGGVSDSAECKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVLFERHRFDSQRLFINWRRRLSGEDQSAAYVSRAVVGGHGGKSSSNGGGNSKNEVVSGVGVGWSRGFYSAHVPYPAHHQVLPYQHDHCLHA 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme47009g00001 178 SMART B3_2 2 108 IPR003340 GO:0003677
Trme47009g00001 178 ProSiteProfiles B3 DNA-binding domain profile. 2 108 IPR003340 GO:0003677
Trme47009g00001 178 SUPERFAMILY DNA-binding pseudobarrel domain 1 107 IPR015300 -
Trme47009g00001 178 CDD B3_DNA 1 98 IPR003340 GO:0003677
Trme47009g00001 178 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 1 130 IPR044800 GO:0003700
Trme47009g00001 178 Gene3D - 1 116 IPR015300 -
Trme47009g00001 178 Pfam B3 DNA binding domain 2 107 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme47009g00001 Trme-Chr47009 27 561 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme47009g00001 1 107 RAV Transcription Factor Family AT3G11580 78.261 1.90e-59 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trme47009g00001 B3 2.4e-29 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme47009g00001 K09287 - gmx:100795470 243.817