Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme47004g00001 ACTGGAAAAGTTATTGCTGATGTTGCTGGTAGCATGACTAATGATCTTGCTAAAGGTTCCGACGCCGTTGGGTCGGTTTTGGCAATCCTCGATAGGTCTACGAAAATTGAGCCCGATGATTTAGAAGGTTACAAGGTTGAAAATTTAATAGGAAAAGTTGAACTTCATGATGTACATTTTGCGTATCCGGCTAGACCTAATGTGATGATCTTTCGAGGGTTCTCGATTAAAATTGACGCCGGAAAATCAACGGCTTTGGTTGGGGAAAGTGGTTCGGGAAAATCGACAATCATGGGACTAATTGAAAGATTTTATGATCCAATAAAAGGGATAGTGACAATTGATGGTAGAGATATAAAGTCTTATAATCTAAGGTCATTAAGAAAACACATTGCACTTGTGAGTCAAGAACCAACATTGTTTGGTGGTACCATAAGGGAGAATATTGCATATGGAACTTATGATGATAAAGTTGATGAGAGTGAGATTATTGAGGCATCAAAGGCTGCAAATGCTCATG 520 0.3885 TGKVIADVAGSMTNDLAKGSDAVGSVLAILDRSTKIEPDDLEGYKVENLIGKVELHDVHFAYPARPNVMIFRGFSIKIDAGKSTALVGESGSGKSTIMGLIERFYDPIKGIVTIDGRDIKSYNLRSLRKHIALVSQEPTLFGGTIRENIAYGTYDDKVDESEIIEASKAANAH 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme47004g00001 173 Gene3D ABC transporter type 1, transmembrane domain 8 42 IPR036640 GO:0005524|GO:0016020
Trme47004g00001 173 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 3 173 IPR039421 -
Trme47004g00001 173 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 45 173 IPR027417 -
Trme47004g00001 173 Pfam ABC transporter 73 159 IPR003439 GO:0005524
Trme47004g00001 173 Gene3D - 43 173 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme47004g00001 Trme-Chr47004 463 982 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme47004g00001 11 173 Calmodulin-binding Proteins AT2G36910 52.439 1.69e-50 172