Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme469g00001 ATTAGCATGCCTCCTCAAAATATAACATTTCCACAGAATAAACTTGATGNNNNTGCAGAAAACAATGCTGCAAGCAATAATTCTAGTGGTTCTGTGGCTTCCACACAAAAAAATGTCGAACACAGCGGAAAAACTAGTGAGGCTCAAGATATGTCCCAGCTAAAGAGTTCTTCATGTTTGAGCAATACTAGCCAGGCAAAGCACGAAAATTCTACCAGATATGAAAGGGAGTCTGCTGAGTATAACGAAGAAACTGGAGAGAAATCAACTATAATAGCATCTAAAGCTGCAGGGTATGACAAAATTTCAACAGGTTTAAGGCTTGGTCAAAGCTATGATTATATAGAAACAGAAAACCAAGATGAAGTGTTAAAAACAGAGTTTAGCAAAAACAATCCTCATACTAATACAAAGATTCATCAATGTAATGATGAACTAGAAGAACATTCTGCTGGAGCTATTGACTTGATGGCTACTTTTCAGAATCTTCCAAAGAGCAGTTATGCAGATTGTAGTTTCAACGCTGGTGGTAACACAGCCAATTTTGATACACAATTGGAACTTTCTTTACAAAGAGATTTTCATGGAAGCTCACCTAATCCTACCATTGAAGAAAGGCAAATATTGAATCATTCAAATGCTTCTGCGTTTTCTTTGTATGGCAGTAGTACGTTGTTGAAGCCTTTATTTCCAACAAAGAATTCACATGAATCACAAAAATTATCGGAAAATACAAATATTGGTCATCAGTATGATGTTAAAAAACTAAAGCAGGAAAATATCACCTATCTGGCAATTGGTCAGCCTGAACAAGTTGATGCAAAATTTCTTAACAGTCAACTTGAATTCTTTCCTGCCACCAGGTCCACTTCTGATAATAAGTCTATGGAACATGATAATGTTTTTCATTCTATGTTCGATGCACAGTCAGGTATGCATCCCACATGGACACCAAAATCAGTGTTCCAAAAAGAGAGTTCTCCATTTCCCACAAGTATTTCCTCCCACTCCAACCCTAAAAGTCATAGCTCAGAACCTCGCCAATGGTCGGATGATGCCACCTATACTTGTGATCAAAATGTAAATGATCAAAGCAATATAGATTGTGACGACTCTCCATCTAACGGTCAAAGTTGTGGTACTAGTTTTTACCATGATGTGGAAAATTGCAACACTAATGGTGTATGTGAAGAAGACATAGGCAGCGGAAGTAATGGAAATGCCCCTTCGGCAGTTGTAGGCAAGAACACCCTTGAAAACTCTATGAATAATGATCACTATGATGGGCTTAGAGGCACAAATTCTCATCGCACCAGCCAAAGAGAAGCAGCTCTAACGAAGTTTCGACTGAAGCGGAAAGACAGATGCTATGATAAAAAGGTCCGATATGAAAGCCGGAAAAGACAGGCAGAGAATCGCCCCCGGGTGAAAGGGCAGTTTGTTCGCCAAGTACACGGTGAACTTCCAGCAGCTGATACCGGAAGTTACTGA 1491 0.391 ISMPPQNITFPQNKLDXXAENNAASNNSSGSVASTQKNVEHSGKTSEAQDMSQLKSSSCLSNTSQAKHENSTRYERESAEYNEETGEKSTIIASKAAGYDKISTGLRLGQSYDYIETENQDEVLKTEFSKNNPHTNTKIHQCNDELEEHSAGAIDLMATFQNLPKSSYADCSFNAGGNTANFDTQLELSLQRDFHGSSPNPTIEERQILNHSNASAFSLYGSSTLLKPLFPTKNSHESQKLSENTNIGHQYDVKKLKQENITYLAIGQPEQVDAKFLNSQLEFFPATRSTSDNKSMEHDNVFHSMFDAQSGMHPTWTPKSVFQKESSPFPTSISSHSNPKSHSSEPRQWSDDATYTCDQNVNDQSNIDCDDSPSNGQSCGTSFYHDVENCNTNGVCEEDIGSGSNGNAPSAVVGKNTLENSMNNDHYDGLRGTNSHRTSQREAALTKFRLKRKDRCYDKKVRYESRKRQAENRPRVKGQFVRQVHGELPAADTGSY 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme469g00001 496 Coils Coil 453 473 - -
Trme469g00001 496 MobiDBLite consensus disorder prediction 313 381 - -
Trme469g00001 496 MobiDBLite consensus disorder prediction 1 68 - -
Trme469g00001 496 ProSiteProfiles CCT domain profile. 441 483 IPR010402 GO:0005515
Trme469g00001 496 MobiDBLite consensus disorder prediction 1 82 - -
Trme469g00001 496 Pfam CCT motif 441 483 IPR010402 GO:0005515
Trme469g00001 496 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 25 483 IPR045281 GO:0009909
Trme469g00001 496 MobiDBLite consensus disorder prediction 402 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme469g00001 Trme-Chr469 149 2869 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme469g00001 439 484 Response Regulator Gene Family AT2G46790 84.783 9.12e-20 88.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trme469g00001 CCT 2e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme469g00001 K12130 - gmx:100779346 523.472