Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme46959g00001 ATGGGTACCGTGAGCACAGCTCTAACAGAGGAAGCACTCTCAGATAGTCTTAAAAGAAGTATCTATCAGTCTGCGCCTTCAGATGATGCATCCAACTGTGTTGATGAGGATAAGGGCGATATCAAATGCTGCATTTGCCAGGATGAATATGTTGTTGGAGATGAAGTTGGGAGACTGCAATGTTCACATAAGTATCATGTTGATTGTATACAGGACTGGTTGAGRTTGAAGAACTGGTGCCCTATTTGCAAAGGGTCAGCGGCACTGTCCAATTCATCGTCGTCTCATTAA 291 0.4364 MGTVSTALTEEALSDSLKRSIYQSAPSDDASNCVDEDKGDIKCCICQDEYVVGDEVGRLQCSHKYHVDCIQDWLRLKNWCPICKGSAALSNSSSSH 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme46959g00001 96 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 87 IPR045191 GO:0061630
Trme46959g00001 96 SMART ring_2 43 83 IPR001841 -
Trme46959g00001 96 FunFam E3 ubiquitin-protein ligase arkadia 5 89 - -
Trme46959g00001 96 ProSiteProfiles Zinc finger RING-type profile. 43 84 IPR001841 -
Trme46959g00001 96 Pfam Ring finger domain 42 84 IPR001841 -
Trme46959g00001 96 SUPERFAMILY RING/U-box 38 86 - -
Trme46959g00001 96 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 88 IPR013083 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme46959g00001 1 87 C3H Transcription Factor Family AT2G15530 42.529 1.96e-20 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme46959g00001 - - tpra:123907431 180.259