Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme4691g00001 ATGGAATCTTGGAGTTACATCCCAGAAGAAAGAAGCTATTTGTTTTCTGATGAAATGGACTTTTCGCTTGATGCTTTTATGAGAAGTAGAAAACCATTGGTTGAATGGGAGAACAAATCTTCATGTAACTTTGAAAGAGATGGATTTAAAGGTATGGAGTTTGTGGACTTGGGATTTCCCGATTTTCTGCAAAAGTCTTTTCATAGTAGCAAGCCTATGGAGACATCTAGGATTGTTCATGGTTCGGTTCAGACATCCAGCTGTGAGCTGGATAGTAATAATTCTAGTAAAAGAGGGAATTCATCTTCACATGTTATTGCTTTTGATTCATCTTTTGGCAAAGAAGATTCTGAGCCAAAGCATTTAAGTTCTTCTCTAGTTGAATTGAAAAATCGTGATTCTTCGTCAATTGATCTGAAGCTAGGGAGATTAGCAGATTTTCAAGGTGCAAGTGATAGANNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNAGCTCGCACCTCTAGCTTACCTGCTCAGGCTCCTGTATGTCAAGTTTATGGTTGTAATATGGACCTTAGCTCCTCGAAAGATTACCACAAAAGGCATAGAGTTTGTGATGTTCATTCCAAGACAGCTAAAGTTATTGTGAATGGCATTGAACAGAGGTTTTGTCAGCAGTGCAGCAGGTTCCATTTGGTAGCTGAATTCGATGATGGTAAACGTAGTTGTCGCAGACGTCTTGCTGGACACAACGAACGCCGAAGGAAACCTCAGTTGGATTACATGACTAGTAAACAACACAAGATTCTTCAGTCATATCAAG 826 0.3692 MESWSYIPEERSYLFSDEMDFSLDAFMRSRKPLVEWENKSSCNFERDGFKGMEFVDLGFPDFLQKSFHSSKPMETSRIVHGSVQTSSCELDSNNSSKRGNSSSHVIAFDSSFGKEDSEPKHLSSSLVELKNRDSSSIDLKLGRLADFQGASDRXXXXXXXXXXXXXXXXXXARTSSLPAQAPVCQVYGCNMDLSSSKDYHKRHRVCDVHSKTAKVIVNGIEQRFCQQCSRFHLVAEFDDGKRSCRRRLAGHNERRRKPQLDYMTSKQHKILQSYQ 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme4691g00001 275 FunFam Squamosa promoter-binding-like protein 14 175 245 - -
Trme4691g00001 275 Pfam SBP domain 184 257 IPR004333 GO:0003677
Trme4691g00001 275 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 92 259 IPR044817 GO:0003677
Trme4691g00001 275 ProSiteProfiles Zinc finger SBP-type profile. 181 258 IPR004333 GO:0003677
Trme4691g00001 275 Gene3D - 175 245 IPR036893 GO:0003677|GO:0005634
Trme4691g00001 275 SUPERFAMILY SBT domain 182 263 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme4691g00001 Trme-Chr4691 820 1786 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme4691g00001 172 275 SBP-box Gene Family AT1G69170 72.115 3.52e-51 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Trme4691g00001 SBP 1.4e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme4691g00001 - - psat:127119704 411.764