Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme4688g00001 ATGTCCAAGCTTGTTGGTAATGCCGATGTTGATGATGATGCTCCTTCGGTTGACATTGCCAAAAGCCAAAACCAATTGCCAGATAATAATACCGGAATTAAGTCGAAACTTTTCAATAGTTTTCACGTGCATGACTTAGCTTGTTTTGCAGTTGATCAACACAATCTGAAAAAGAATGCAAATCTAAAGTTTCTGGAGGTGTTATATATGAAATGGATATTGGTAGCAGGATTGTTGTATCATATTATACTGGAGGCCAAGGATGGAGAGAAGGTGCTGCTCGATACTCAGTCAGACATTGTGCATACAAGCGGTCGCAGCAAGATCCCAATCCATCCAGCAAATATGAAGATCATCGCCGCTTATTTGCTTGCTGTTTTGGGCGGTAACGCATCCCCTTCTGCTGCTGATATCAAAAACATCCTTGGTTCAGTTGGAGTTGAGGGTGAGGACTCAAATATTGAGTTGCTCTTGAGTGTAGTCAAGGGGAAAGATTTTGCTGAGCTTATCGCAAGTGGAAGAGAAAAGGAAGAATCCGATGATGACATGGGCTTCAGCTTGTTTGACTAA 570 0.4193 MSKLVGNADVDDDAPSVDIAKSQNQLPDNNTGIKSKLFNSFHVHDLACFAVDQHNLKKNANLKFLEVLYMKWILVAGLLYHIILEAKDGEKVLLDTQSDIVHTSGRSKIPIHPANMKIIAAYLLAVLGGNASPSAADIKNILGSVGVEGEDSNIELLLSVVKGKDFAELIASGREKEESDDDMGFSLFD 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme4688g00001 189 CDD CY 39 90 IPR000010 GO:0004869
Trme4688g00001 189 Gene3D - 32 110 - -
Trme4688g00001 189 CDD Ribosomal_P2 116 189 IPR044076 GO:0002182|GO:0003735|GO:0022625
Trme4688g00001 189 Hamap 50S ribosomal protein L12 [rpl12]. 117 189 IPR027534 GO:0003735|GO:0005840|GO:0006414
Trme4688g00001 189 FunFam 60S acidic ribosomal protein P2 114 174 - -
Trme4688g00001 189 Pfam Aspartic acid proteinase inhibitor 40 92 IPR000010 GO:0004869
Trme4688g00001 189 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 116 176 IPR044076 GO:0002182|GO:0003735|GO:0022625
Trme4688g00001 189 Gene3D - 115 173 IPR038716 -
Trme4688g00001 189 SUPERFAMILY Cystatin/monellin 37 89 IPR046350 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme4688g00001 Trme-Chr4688 377 1789 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme4688g00001 116 176 Cytoplasmic Ribosomal Protein Gene Family AT2G27710 77.049 8.76e-26 93.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme4688g00001 K02943 - ming:122089001 102.834