Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme4679g00001 ATGGGGAGGAAAGGAAGTTGGTTTTCTTCTGTGAAGAAACTTTTCTTTATTTCTTCTGATTCTTCCAAAAAAGAACAGAAACCTCATAATCATAATCATAAGGCGTCAAAGTTAACATGTTTTGGACATCATAATTATGATGATGCTGAGTGGAAAACTGGAGGAGTAGCACCAATAACTATTGTTCCTGTTCCATCTCTTCCTGCAAAAAAAGATAAAAAACCAAAAAAAATTAAGGTAGAGGATGAACAGAACAAACAAGCTTTTTCATTGATTTTAGCCACAGCCGTTGCTACCGGTGCCGCAGTTGCTGCTGCTCAGGCTGCTGCAGGGACCCCTCGTCTCAAAAGTATTCCTCGTTGTTACATTGGAAAAACAGCCGAAGAAATAGCCGCTATCAAAATTCAAACCGCCTACCGCGGATATCTGGCAAGGAGAACGTTGCGTGGATTGAGAGGCTTGGCGAGGTTGAAAGCATTGGTGAAAGGACAATCTGTTCAACGACAAGCGGCTACTACATTACAATGCATGCAAACTCTTTCGCGTTTGCAATCGCAAGTTAGCGCGAGGAAGATCAGAATGTCAGAGGAGAATCAATCTTTCCAACGCCAACTTCAGCATAAACGTGAAAGGGAAATGGGCAAGTTACAAGCTGCCCAACCTATTGGAGAAAATTGGGATTATAGTTCACAATCAAAGGAGCAAATCCAAGCAAAATTGTTGAACAGACAAATAGCTGCTATGAGAAGAGAAAAGGCTTTGGCCTATGCATCAACACATCAGCAAACATGGAGAAACTCTTCAAAACCTACAGATGCAACAATTATGGATCCAAACAATCCTCATTGGGGATGGAATTGGCTTGATAGATGGATGGCTTCAAGACCATGGGAAGGTCAAACCAATAAGGATMAAAARAATTATAAATCAGCAAAAGGTGCTGCAAGCCATACTATGTCAGTTGGAGAAATCTCCAAATT 980 0.4102 MGRKGSWFSSVKKLFFISSDSSKKEQKPHNHNHKASKLTCFGHHNYDDAEWKTGGVAPITIVPVPSLPAKKDKKPKKIKVEDEQNKQAFSLILATAVATGAAVAAAQAAAGTPRLKSIPRCYIGKTAEEIAAIKIQTAYRGYLARRTLRGLRGLARLKALVKGQSVQRQAATTLQCMQTLSRLQSQVSARKIRMSEENQSFQRQLQHKREREMGKLQAAQPIGENWDYSSQSKEQIQAKLLNRQIAAMRREKALAYASTHQQTWRNSSKPTDATIMDPNNPHWGWNWLDRWMASRPWEGQTNKDXKNYKSAKGAASHTMSVGEISK 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme4679g00001 326 PANTHER IQ-DOMAIN 5-RELATED 1 309 - -
Trme4679g00001 326 Gene3D iswi atpase 125 152 - -
Trme4679g00001 326 ProSiteProfiles IQ motif profile. 128 156 IPR000048 GO:0005515
Trme4679g00001 326 MobiDBLite consensus disorder prediction 298 326 - -
Trme4679g00001 326 Pfam IQ calmodulin-binding motif 131 149 IPR000048 GO:0005515
Trme4679g00001 326 Coils Coil 191 211 - -
Trme4679g00001 326 SMART iq_5 127 149 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme4679g00001 Trme-Chr4679 300 2080 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme4679g00001 1 320 IQD Protein Family AT3G52290 50.000 2.13e-82 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme4679g00001 - - gmx:100807307 359.377