Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme46778g00001 ATGCAAGCCTGCAACATTGCCATTGGACGAGAAGGAGGAGTTGCACCTCTGATTGCACTGGCACGGTCCGAAGCAGAGGATGTTCATGAAACGGCTGCAGGAGCACTATGGAATCTTGCTTTCAACCCTGGTAATGCTTTACGAATAGTGGAAGAAGGTGGAGTAGCTGCACTTGTTGATCTTTGTTCTTCATCAGTGTCAAAGATGGCACGGTTTATGGCGGCATTGGCTTTGGCCTACATGTTTGATGGGAG 254 0.4882 MQACNIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVAALVDLCSSSVSKMARFMAALALAYMFDG 84
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme46778g00001 84 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 12 54 IPR000225 GO:0005515
Trme46778g00001 84 Pfam Armadillo/beta-catenin-like repeat 42 81 IPR000225 GO:0005515
Trme46778g00001 84 Pfam Armadillo/beta-catenin-like repeat 7 40 IPR000225 GO:0005515
Trme46778g00001 84 SUPERFAMILY ARM repeat 7 82 IPR016024 -
Trme46778g00001 84 PANTHER PROTEIN ARABIDILLO 1 3 84 - -
Trme46778g00001 84 SMART arm_5 42 83 IPR000225 GO:0005515
Trme46778g00001 84 SMART arm_5 1 41 IPR000225 GO:0005515
Trme46778g00001 84 Gene3D - 2 83 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme46778g00001 Trme-Chr46778 108 776 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme46778g00001 5 84 U-box Gene Family AT5G62560 35.802 6.20e-06 40.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme46778g00001 - - peu:105120717 152.91