Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme46727g00001 GCTGCTGCCGCCATTCCTATAGTGGGGACCCATGTTTGGGTGGAGGATTCTGATGTAGCTTGGATAGACGGCGAGGTCTTGGAGGTTAATGGAGAAGAAGTCAAAGTCCTTTGCACTTCAGGAAAGACGGTTGTTGTCAAAGCTTCCGATATTTTTCATAGAGATACCGAAGTTCCACCATGTGGAGTGGATGATATGACAAAGCTCGCATACCTGCATGAGCCTGGAGTCCTAAATAATCTGAGATCAAGATATGATATCAATGAAATTTATGTACGCATCTCAGTTTCCAACTCTCATAACATTGCGTCTGTTGCGTGGCGGGAATGTCACCCTTCAATTTTTATTTATTAG 354 0.4379 AAAAIPIVGTHVWVEDSDVAWIDGEVLEVNGEEVKVLCTSGKTVVVKASDIFHRDTEVPPCGVDDMTKLAYLHEPGVLNNLRSRYDINEIYVRISVSNSHNIASVAWRECHPSIFIY 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme46727g00001 117 Gene3D - 10 53 IPR008989 GO:0003774|GO:0005524|GO:0051015
Trme46727g00001 117 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 7 56 IPR004009 GO:0003774|GO:0005524|GO:0016459
Trme46727g00001 117 Gene3D Kinesin motor domain 60 104 IPR036961 -
Trme46727g00001 117 Pfam Myosin N-terminal SH3-like domain 8 51 IPR004009 GO:0003774|GO:0005524|GO:0016459
Trme46727g00001 117 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 94 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme46727g00001 Trme-Chr46727 372 839 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme46727g00001 6 91 Myosins gene family AT1G04160 70.930 1.96e-41 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme46727g00001 K10357 - gmx:100786893 169.859