Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme466994g00001 ATGGATTTGCCACCAGGATTTAGGTTTCATCCAACTGATGAAGAGCTTATTAGCCATTATCTTCTAAGAAAAGTAACCGACACAAACTTTTCTGCTAAGGCCATTGGAGAAGTTGTTTTAAACAAATCTGAACCTTGGGATTTGCCAT 148 0.3784 MDLPPGFRFHPTDEELISHYLLRKVTDTNFSAKAIGEVVLNKSEPWDLP 49
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme466994g00001 49 ProSiteProfiles NAC domain profile. 3 49 IPR003441 GO:0003677|GO:0006355
Trme466994g00001 49 Gene3D NAC domain 12 49 IPR036093 GO:0003677|GO:0006355
Trme466994g00001 49 SUPERFAMILY NAC domain 2 49 IPR036093 GO:0003677|GO:0006355
Trme466994g00001 49 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 2 49 - -
Trme466994g00001 49 Pfam No apical meristem (NAM) protein 4 49 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme466994g00001 Trme-Chr466994 33 180 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme466994g00001 1 49 NAC Transcription Factor Family AT5G07680 81.633 8.01e-24 88.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trme466994g00001 NAM 2.7e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme466994g00001 - - gmx:547650 99.3673