Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme46689g00001 AAACCAGCTTTAGATTGGAATGCAAGAAAGAGGATAGCAATTGGAGCTGCAAGGGGACTTTTGTATCTTCATGAACAATGTGATCCAAAGATAATACATAGAGATGTAAAGGCTGCCAATGTGCTTCTTGATGACGACTATGAGGCTATCGTTGGTGATTTTGGCCTTGCAAAGCTCCTTGATCATGCTGATTCCCATGTCACCACTGCTGTCCGTGGTACTGTTGGGCACATTGCTCCGGAGTACCTCTCCACTGGCCAATCATCTGAGAAAACTGATGTATATGGATTCGGCATTCTCTTGTTAGAGCTTATAACTGGAATGACAGCTCTTGAGTTCGGGAAAACCTTGAATCAAAAAGGTGCTATGCTTGAATGGGTAAGTCTATTCTCTGTAATTGAAACAAACATTCTAGTGCATTTCATTCATTAG 432 0.419 KPALDWNARKRIAIGAARGLLYLHEQCDPKIIHRDVKAANVLLDDDYEAIVGDFGLAKLLDHADSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVYGFGILLLELITGMTALEFGKTLNQKGAMLEWVSLFSVIETNILVHFIH 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme46689g00001 143 Pfam Protein kinase domain 8 119 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme46689g00001 143 SMART tyrkin_6 1 142 IPR020635 GO:0004713|GO:0006468
Trme46689g00001 143 SUPERFAMILY Protein kinase-like (PK-like) 4 120 IPR011009 -
Trme46689g00001 143 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 6 119 - -
Trme46689g00001 143 ProSitePatterns Serine/Threonine protein kinases active-site signature. 31 43 IPR008271 GO:0004672|GO:0006468
Trme46689g00001 143 Gene3D Transferase(Phosphotransferase) domain 1 1 139 - -
Trme46689g00001 143 ProSiteProfiles Protein kinase domain profile. 1 143 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme46689g00001 143 FunFam Os07g0541700 protein 1 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme46689g00001 Trme-Chr46689 247 678 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme46689g00001 1 137 Receptor kinase-like Gene Family AT2G23950 83.212 1.27e-81 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Trme46689g00001 Pkinase 6.9e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme46689g00001 - - zju:107425827 242.662