Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme46650g00001 ATGTCTCGTTCAGTTCCTTTGGTTTCCACCATCTTTGTCCTCCTTCTCCTTCTTGTAGCCACTGGGCCAGTGGCTGAGGCAAGGACATGTGAGTCACAAAGTCACAAATTCAAAGGACCATGTGTGAGTGATCACAACTGTGCTTCTGTGTGCCAAACAGAGCGTTTCCCTGGAGGACACTGCCGTGGATTCCGTCGTAGATGCTTTTGCACTACACAYTGTTCTTAA 228 0.4825 MSRSVPLVSTIFVLLLLLVATGPVAEARTCESQSHKFKGPCVSDHNCASVCQTERFPGGHCRGFRRRCFCTTHCS 75
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme46650g00001 75 PANTHER DEFENSIN-LIKE PROTEIN 1 7 74 - -
Trme46650g00001 75 Gene3D - 28 74 IPR036574 -
Trme46650g00001 75 PRINTS Purothionin signature 29 44 IPR008176 GO:0006952
Trme46650g00001 75 PRINTS Purothionin signature 59 73 IPR008176 GO:0006952
Trme46650g00001 75 Pfam Gamma-thionin family 28 74 - -
Trme46650g00001 75 CDD Knot1 39 71 IPR003614 GO:0006952
Trme46650g00001 75 SMART gth_4 29 74 IPR003614 GO:0006952
Trme46650g00001 75 ProSitePatterns Gamma-thionins family signature. 28 51 IPR008176 GO:0006952
Trme46650g00001 75 SUPERFAMILY Scorpion toxin-like 28 74 IPR036574 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme46650g00001 1 74 Plant Defensins Gene Families AT2G02100 62.338 1.85e-29 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme46650g00001 - - cam:101490338 86.6557