Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme4663g00001 ATGGGATCTTCTTCTGAAGTTCATTTTTCTGGATTTCACATGGATGGTTTTGAGAAAAGAGAGGCTAACACAGAACAACCAACAACATCAGCAACTGACATGTACAACCAACCTTTCATCATAGGTGTTGCTGGGGGTGCAGCATCGGGCAAAAAAACAGTTTGTGATATGATTGTTCAACAGCTTCATGACCAGCGAGTTGTGCTTGTTAATCAGGATTCTTTTTACAATAACTTGTCTGAGGAGGAACGAGCAAGAGTACAAGATTACAACTTTGATCATCCTGATGCTTTTGATACTGAAGAATTGCTTCGTGTTATGGATAAGCTGAAGCATGGCGAAGCTGTAGATCTTCCAAAGTATGATTTTAAGAGTTACAAAAGTGATGCGTTAAGAAGGGTGAACCCTTCAGATGTTATAATTTTGGAAGGCATCCTTGTTTTTCATGATCCACGTGTTCGGGAGTTGATGAATATGAAGATATTTGTTGACACAGGTCCTTTTGCTTCCTTTAACTAA 519 0.3911 MGSSSEVHFSGFHMDGFEKREANTEQPTTSATDMYNQPFIIGVAGGAASGKKTVCDMIVQQLHDQRVVLVNQDSFYNNLSEEERARVQDYNFDHPDAFDTEELLRVMDKLKHGEAVDLPKYDFKSYKSDALRRVNPSDVIILEGILVFHDPRVRELMNMKIFVDTGPFASFN 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme4663g00001 172 PANTHER URIDINE KINASE 18 166 - -
Trme4663g00001 172 Pfam Phosphoribulokinase / Uridine kinase family 40 165 IPR006083 GO:0005524|GO:0016301
Trme4663g00001 172 CDD UMPK 40 165 IPR000764 -
Trme4663g00001 172 Gene3D - 10 169 IPR027417 -
Trme4663g00001 172 PRINTS Uridine kinase signature 113 128 - -
Trme4663g00001 172 PRINTS Uridine kinase signature 68 79 - -
Trme4663g00001 172 PRINTS Uridine kinase signature 38 55 - -
Trme4663g00001 172 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 28 166 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme4663g00001 Trme-Chr4663 1 2022 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme4663g00001 3 165 PRT Gene Family AT4G26510 69.697 6.42e-80 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme4663g00001 K00876 - gmx:100527893 302.753