Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme46628g00001 AAGAAACATAAGCATGTTGATTTGAGAGCTTTGAAGAAATGGTCTAGGCAGATTTTGGAGGGTCTTTCATATCTTCATAGTCATAATCCACCAGTTATTCATCGAGACCTTAAGTGTGACAATATTTTTGTCAATGGGAATCAAGGGGAGGTGAAAATTGGCGATTTAGGATTGGCAGCCATTCTTCAACAGGCCAATTCAGCTCACAGTGTTATAGGTACTCCTGAGTTTATGGCCCCGGAACTTTATGAAGAGGAGTACAATGAGCTTGTTGACATTTATGCTTTTGGCATGTGCTTGCTAGAATTGGTAACTGTTGAGTACCCATATGTTGAATGTGCCAATGCTGCTCAAATATACAAGAAAGTGACATCT 375 0.3973 KKHKHVDLRALKKWSRQILEGLSYLHSHNPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILQQANSAHSVIGTPEFMAPELYEEEYNELVDIYAFGMCLLELVTVEYPYVECANAAQIYKKVTS 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme46628g00001 125 ProSiteProfiles Protein kinase domain profile. 1 125 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme46628g00001 125 SMART serkin_6 2 125 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme46628g00001 125 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 1 125 - -
Trme46628g00001 125 FunFam WNK protein kinase 1 125 - -
Trme46628g00001 125 SUPERFAMILY Protein kinase-like (PK-like) 2 123 IPR011009 -
Trme46628g00001 125 ProSitePatterns Serine/Threonine protein kinases active-site signature. 32 44 IPR008271 GO:0004672|GO:0006468
Trme46628g00001 125 Gene3D Transferase(Phosphotransferase) domain 1 1 125 - -
Trme46628g00001 125 Pfam Protein kinase domain 3 119 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme46628g00001 Trme-Chr46628 508 984 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme46628g00001 1 125 MAP Kinase Kinase Kinase AT3G48260 89.600 4.07e-80 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Trme46628g00001 Pkinase 1.2e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme46628g00001 K08867 - gmx:100301899 253.062