Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme46568g00001 CGAGCATTTTGGGACAAGAGACTTTCACAAGAAGTCAGTGGAGATGCACTTGGTGAGGAATTTAAAGGCTACGTCTTTAAAATTACCGGAGGATGCGACAAGCAAGGCTTTCCAATGAAGCAGGGAGTGCTGACCCCTGGCCGTGTTCGCCTTTTGCTTCACAGGGGAACTCCTTGCTTTCGTGGATATGGAAGGCGTAATGGAGAGCGCCGAAGGAAGTCTGTTCGTGGGTGCATTGTTAGCCCAGACCTTTCTGTTCTGAACTTGGTAATTGTGAAGAAGGGTGAGAATGATTTACCTGGCCTGACTGATGTTGAGAAGCCAAGGATGAGAGGTCC 338 0.4911 RAFWDKRLSQEVSGDALGEEFKGYVFKITGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGENDLPGLTDVEKPRMRGP 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme46568g00001 113 ProSitePatterns Ribosomal protein S6e signature. 28 39 IPR018282 GO:0003735|GO:0005840|GO:0006412
Trme46568g00001 113 SMART Ribosomal_S6e_2 1 104 IPR001377 GO:0003735|GO:0005840|GO:0006412
Trme46568g00001 113 PANTHER 40S RIBOSOMAL PROTEIN S6 1 113 IPR001377 GO:0003735|GO:0005840|GO:0006412
Trme46568g00001 113 Pfam Ribosomal protein S6e 1 104 IPR001377 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme46568g00001 Trme-Chr46568 268 986 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme46568g00001 1 97 Cytoplasmic Ribosomal Protein Gene Family AT5G10360 93.814 1.23e-63 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme46568g00001 K02991 - gmx:547746 219.164